RNA–Protein interactions for RNA: snR47

snR47, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR47, Length 99 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR47	snR47	ASG1	P40467	964 aa		0.28	□□□□□ -2.36
snR47	snR47	YJL107C	P42947	387 aa		0.28	□□□□□ -2.36
snR47	snR47	ALG2	P43636	503 aa		0.28	□□□□□ -2.36
snR47	snR47	PSP1	P50896	841 aa	Known RBP	0.28	□□□□□ -2.36
snR47	snR47	NPY1	P53164	384 aa		0.28	□□□□□ -2.36
snR47	snR47	ARP9	Q05123	467 aa		0.28	□□□□□ -2.36
snR47	snR47	LYS21	Q12122	440 aa	Known RBP	0.28	□□□□□ -2.36
snR47	snR47	FRS1	P15624	595 aa	Known RBP	0.27	□□□□□ -2.37
snR47	snR47	MSH1	P25846	959 aa		0.27	□□□□□ -2.37
snR47	snR47	CAP1	P28495	268 aa	Known RBP	0.27	□□□□□ -2.37
snR47	snR47	PET127	P32606	800 aa		0.27	□□□□□ -2.37
snR47	snR47	PPG1	P32838	368 aa		0.27	□□□□□ -2.37
snR47	snR47	ATG27	P46989	271 aa		0.27	□□□□□ -2.37
snR47	snR47	YNL144C	P53907	740 aa		0.27	□□□□□ -2.37
snR47	snR47	RAD33	Q04231	177 aa		0.27	□□□□□ -2.37
snR47	snR47	ISA1	Q07821	250 aa	Predicted RBP	0.27	□□□□□ -2.37
snR47	snR47	PCK1	P10963	549 aa		0.26	□□□□□ -2.37
snR47	snR47	PRI2	P20457	528 aa		0.26	□□□□□ -2.37
snR47	snR47	MIH1	P23748	554 aa		0.26	□□□□□ -2.37
snR47	snR47	MSN2	P33748	704 aa		0.26	□□□□□ -2.37
snR47	snR47	DHR2	P36009	735 aa	Predicted RBP	0.26	□□□□□ -2.37
snR47	snR47	SSZ1	P38788	538 aa	Known RBP	0.26	□□□□□ -2.37
snR47	snR47	ERV46	P39727	415 aa		0.26	□□□□□ -2.37
snR47	snR47	SPF1	P39986	1215 aa	Known RBP	0.26	□□□□□ -2.37
snR47	snR47	HUL4	P40985	892 aa		0.26	□□□□□ -2.37
snR47	snR47	NOP2	P40991	618 aa	Known RBP	0.26	□□□□□ -2.37
snR47	snR47	CIR1	P42940	261 aa		0.26	□□□□□ -2.37
snR47	snR47	ESBP6	P53918	673 aa		0.26	□□□□□ -2.37
snR47	snR47	HLR1	Q04429	423 aa		0.26	□□□□□ -2.37
snR47	snR47	YPS7	Q06325	596 aa		0.26	□□□□□ -2.37
snR47	snR47	MHR1	Q06630	226 aa		0.26	□□□□□ -2.37
snR47	snR47	RAD34	Q06665	692 aa		0.26	□□□□□ -2.37
snR47	snR47	UBX5	Q06682	500 aa		0.26	□□□□□ -2.37
snR47	snR47	RLF2	Q12495	606 aa		0.26	□□□□□ -2.37
snR47	snR47	RQC2	Q12532	1038 aa	Known RBP	0.26	□□□□□ -2.37
snR47	snR47	CHO2	P05374	869 aa	Known RBP	0.25	□□□□□ -2.37
snR47	snR47	GAL11	P19659	1081 aa		0.25	□□□□□ -2.37
snR47	snR47	NAP1	P25293	417 aa	Known RBP	0.25	□□□□□ -2.37
snR47	snR47	LOS1	P33418	1100 aa	Predicted RBP	0.25	□□□□□ -2.37
snR47	snR47	MCD4	P36051	919 aa		0.25	□□□□□ -2.37
snR47	snR47	BMT2	P38278	337 aa		0.25	□□□□□ -2.37
snR47	snR47	YNL092W	P53934	400 aa		0.25	□□□□□ -2.37
snR47	snR47	ACS1	Q01574	713 aa		0.25	□□□□□ -2.37
snR47	snR47	IZH1	Q03419	316 aa		0.25	□□□□□ -2.37
snR47	snR47	VBA4	Q04602	768 aa	Known RBP	0.25	□□□□□ -2.37
snR47	snR47	SVF1	Q05515	481 aa		0.25	□□□□□ -2.37
snR47	snR47	ECI1	Q05871	280 aa		0.25	□□□□□ -2.37
snR47	snR47	CRT10	Q08226	957 aa		0.25	□□□□□ -2.37
snR47	snR47	VHS3	Q08438	674 aa		0.25	□□□□□ -2.37
snR47	snR47	CAN1	P04817	590 aa		0.24	□□□□□ -2.37
snR47	snR47	BAR1	P12630	587 aa		0.24	□□□□□ -2.37
snR47	snR47	IME1	P21190	360 aa		0.24	□□□□□ -2.37
snR47	snR47	PRP22	P24384	1145 aa	Known RBP	0.24	□□□□□ -2.37
snR47	snR47	RAD24	P32641	659 aa		0.24	□□□□□ -2.37
snR47	snR47	RIM2	P38127	377 aa		0.24	□□□□□ -2.37
snR47	snR47	PBP2	P38151	413 aa	Known RBP RIP-Chip data	0.24	□□□□□ -2.37	not detected
snR47	snR47	ARN1	P38731	627 aa		0.24	□□□□□ -2.37
snR47	snR47	RTS1	P38903	757 aa		0.24	□□□□□ -2.37
snR47	snR47	MAM1	P40065	302 aa		0.24	□□□□□ -2.37
snR47	snR47	TIS11	P47977	285 aa		0.24	□□□□□ -2.37
snR47	snR47	SDT1	P53078	280 aa		0.24	□□□□□ -2.37
snR47	snR47	MTD1	Q02046	320 aa	Known RBP	0.24	□□□□□ -2.37
snR47	snR47	TIM50	Q02776	476 aa		0.24	□□□□□ -2.37
snR47	snR47	RCR2	Q03446	210 aa	Known RBP	0.24	□□□□□ -2.37
snR47	snR47	CAC2	Q04199	468 aa		0.24	□□□□□ -2.37
snR47	snR47	ARR3	Q06598	404 aa		0.24	□□□□□ -2.37
snR47	snR47	RPL8B	P29453	256 aa	Known RBP	0.23	□□□□□ -2.37
snR47	snR47	RPN2	P32565	945 aa	Known RBP	0.23	□□□□□ -2.37
snR47	snR47	MTC2	P34246	357 aa		0.23	□□□□□ -2.37
snR47	snR47	SLD2	P34252	453 aa		0.23	□□□□□ -2.37
snR47	snR47	VPS41	P38959	992 aa		0.23	□□□□□ -2.37
snR47	snR47	YJL132W	P47014	750 aa		0.23	□□□□□ -2.37
snR47	snR47	YJR039W	P47107	1121 aa		0.23	□□□□□ -2.37
snR47	snR47	ERP6	P53198	216 aa		0.23	□□□□□ -2.37
snR47	snR47	EAF7	P53911	425 aa	Known RBP	0.23	□□□□□ -2.37
snR47	snR47	YLR152C	P54072	576 aa		0.23	□□□□□ -2.37
snR47	snR47	PAL1	Q05518	499 aa	Known RBP	0.23	□□□□□ -2.37
snR47	snR47	TMC1	Q08422	150 aa	Predicted RBP	0.23	□□□□□ -2.37
snR47	snR47	PIN2	Q12057	282 aa		0.23	□□□□□ -2.37
snR47	snR47	RTC1	Q08281	1341 aa		0.22	□□□□□ -2.37
snR47	snR47	GDA1	P32621	518 aa		0.22	□□□□□ -2.37
snR47	snR47	MDM31	P38880	579 aa		0.22	□□□□□ -2.37
snR47	snR47	YHR202W	P38887	602 aa		0.22	□□□□□ -2.37
snR47	snR47	CRG1	P38892	291 aa	RIP-Chip data	0.22	□□□□□ -2.37	not detected
snR47	snR47	TPA1	P40032	644 aa	Known RBP	0.22	□□□□□ -2.37
snR47	snR47	FTR1	P40088	404 aa		0.22	□□□□□ -2.37
snR47	snR47	ORC5	P50874	479 aa		0.22	□□□□□ -2.37
snR47	snR47	STP3	Q05937	343 aa		0.22	□□□□□ -2.37
snR47	snR47	YLR112W	Q12130	139 aa		0.22	□□□□□ -2.37
snR47	snR47	Q0010	Q9ZZX9	128 aa		0.22	□□□□□ -2.37
snR47	snR47	OCT1	P35999	772 aa		0.21	□□□□□ -2.38
snR47	snR47	CDS1	P38221	457 aa		0.21	□□□□□ -2.38
snR47	snR47	RPN10	P38886	268 aa	Known RBP	0.21	□□□□□ -2.38
snR47	snR47	BEM4	P39011	633 aa		0.21	□□□□□ -2.38
snR47	snR47	YEL025C	P39991	1188 aa		0.21	□□□□□ -2.38
snR47	snR47	LRO1	P40345	661 aa		0.21	□□□□□ -2.38
snR47	snR47	BUD8	P41698	603 aa		0.21	□□□□□ -2.38
snR47	snR47	IML2	P47031	731 aa		0.21	□□□□□ -2.38
snR47	snR47	VPS25	P47142	202 aa		0.21	□□□□□ -2.38
snR47	snR47	YDL186W	P48568	277 aa		0.21	□□□□□ -2.38

Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms