RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	PPN1	Q04119	674 aa		4.7	□□□□□ -1.66
HSP42	YDR171W	CLF1	Q12309	687 aa	Predicted RBP	4.7	□□□□□ -1.66
HSP42	YDR171W	APC1	P53886	1748 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	RNR2	P09938	399 aa	Known RBP	4.69	□□□□□ -1.66
HSP42	YDR171W	TUP1	P16649	713 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	PRE4	P30657	266 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	HEM12	P32347	362 aa	Predicted RBP	4.69	□□□□□ -1.66
HSP42	YDR171W	MSS1	P32559	526 aa	Predicted RBP	4.69	□□□□□ -1.66
HSP42	YDR171W	MTH1	P35198	433 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	MPE1	P35728	441 aa	Known RBP	4.69	□□□□□ -1.66
HSP42	YDR171W	YHR097C	P38809	366 aa	Known RBP	4.69	□□□□□ -1.66
HSP42	YDR171W	SLD3	P53135	668 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	SPO1	P53541	631 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	TIM50	Q02776	476 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	NSE5	Q03718	556 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	NKP2	Q06162	153 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	RTT109	Q07794	436 aa		4.69	□□□□□ -1.66
HSP42	YDR171W	MRH1	Q12117	320 aa	Predicted RBP	4.69	□□□□□ -1.66
HSP42	YDR171W	LYS2	P07702	1392 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.68	□□□□□ -1.66	not detected
HSP42	YDR171W	UBS1	P38290	277 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	CRG1	P38892	291 aa	RIP-Chip data	4.68	□□□□□ -1.66	not detected
HSP42	YDR171W	EAF5	P39995	279 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	KHA1	P40309	873 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	PRM2	P40534	656 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	NPA3	P47122	385 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	YGR151C	P53287	111 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	ATG4	P53867	494 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	PHM6	Q05637	104 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	YDL086W	Q07505	273 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	CWC2	Q12046	339 aa	Predicted RBP	4.68	□□□□□ -1.66
HSP42	YDR171W	SFI1	Q12369	946 aa		4.68	□□□□□ -1.66
HSP42	YDR171W	PSK1	P31374	1356 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	BIK1	P11709	440 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	FUB1	P25659	250 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	SPC110	P32380	944 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	CTP1	P38152	299 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	CDS1	P38221	457 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	KSP1	P38691	1029 aa	Known RBP	4.67	□□□□□ -1.66
HSP42	YDR171W	YJL206C	P39529	758 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	TMN3	P40071	706 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	FTR1	P40088	404 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	ARG2	P40360	574 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	CCT7	P42943	550 aa	Known RBP	4.67	□□□□□ -1.66
HSP42	YDR171W	ENP2	P48234	707 aa	Known RBP	4.67	□□□□□ -1.66
HSP42	YDR171W	CTR1	P49573	406 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	NMA2	P53204	395 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	SND1	Q04007	877 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	PEX15	Q08215	383 aa		4.67	□□□□□ -1.66
HSP42	YDR171W	YEL076C-A	P0CX16	216 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	YLR464W	P0CX17	216 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	KIN3	P22209	435 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	CLB1	P24868	471 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	DEP1	P31385	405 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	NTH1	P32356	751 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	MTC7	P32633	139 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	ELF1	P36053	145 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	MRPL10	P36520	322 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	YEL076C	P39971	216 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	IRC5	P43610	853 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	CWC22	P53333	577 aa	Known RBP	4.66	□□□□□ -1.66
HSP42	YDR171W	PAP2	P53632	584 aa	Known RBP	4.66	□□□□□ -1.66
HSP42	YDR171W	YNL034W	P53963	612 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	YNL018C	P53976	612 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	VPS20	Q04272	221 aa		4.66	□□□□□ -1.66
HSP42	YDR171W	ETT1	Q08421	412 aa	Known RBP	4.66	□□□□□ -1.66
HSP42	YDR171W	ABF1	P14164	731 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	GRX7	P38068	203 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	EHT1	P38295	451 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	SRP68	P38687	599 aa	Known RBP	4.65	□□□□□ -1.67
HSP42	YDR171W	EMP65	P40085	556 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	PEX8	P53248	589 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	YSH1	Q06224	779 aa	Predicted RBP	4.65	□□□□□ -1.67
HSP42	YDR171W	YCG1	Q06680	1035 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	IRC10	Q08118	586 aa		4.65	□□□□□ -1.67
HSP42	YDR171W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.64	□□□□□ -1.67
HSP42	YDR171W	HMG2	P12684	1045 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	CDC43	P18898	376 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	RMA1	P36001	430 aa	Known RBP	4.64	□□□□□ -1.67
HSP42	YDR171W	GLG1	P36143	616 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	RFC1	P38630	861 aa	Known RBP	4.64	□□□□□ -1.67
HSP42	YDR171W	DSN1	P40568	576 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	DIP5	P53388	608 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	SQS1	P53866	767 aa	Known RBP	4.64	□□□□□ -1.67
HSP42	YDR171W	TGL2	P54857	326 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	MRS2	Q01926	470 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	MTD1	Q02046	320 aa	Known RBP	4.64	□□□□□ -1.67
HSP42	YDR171W	IZH3	Q07959	543 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	YOR378W	Q08902	515 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	MPD2	Q99316	277 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	AUS1	Q08409	1394 aa		4.64	□□□□□ -1.67
HSP42	YDR171W	CDC16	P09798	840 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	MED8	P38304	223 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	YNG2	P38806	282 aa	Known RBP	4.63	□□□□□ -1.67
HSP42	YDR171W	YDL183C	P48569	320 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	FDC1	Q03034	503 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	AIM41	Q12032	185 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	RKI1	Q12189	258 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	TAF3	Q12297	353 aa		4.63	□□□□□ -1.67
HSP42	YDR171W	LAM4	P38800	1345 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 72.7 ms