RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C DGR2P32330 852 aa7.05□□□□□ -1.28
TDP1YBR223C RPT1P33299 467 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C ASH1P34233 588 aa7.05□□□□□ -1.28
TDP1YBR223C HES1P35843 434 aa7.05□□□□□ -1.28
TDP1YBR223C RIM2P38127 377 aa7.05□□□□□ -1.28
TDP1YBR223C PHO89P38361 574 aa7.05□□□□□ -1.28
TDP1YBR223C TRM5P38793 499 aa7.05□□□□□ -1.28
TDP1YBR223C CRP1P38845 465 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C NMD3P38861 518 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C YDR089WP38966 869 aa7.05□□□□□ -1.28
TDP1YBR223C SPR3P41901 512 aa7.05□□□□□ -1.28
TDP1YBR223C ERR3P42222 437 aa7.05□□□□□ -1.28
TDP1YBR223C ARC1P46672 376 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C MIG2P53035 382 aa7.05□□□□□ -1.28
TDP1YBR223C NUT1P53114 1132 aa7.05□□□□□ -1.28
TDP1YBR223C YGR127WP53275 312 aa7.05□□□□□ -1.28
TDP1YBR223C YPR003CP53394 754 aa7.05□□□□□ -1.28
TDP1YBR223C INA17Q02888 182 aa7.05□□□□□ -1.28
TDP1YBR223C YDR476CQ03362 224 aa7.05□□□□□ -1.28
TDP1YBR223C YMR209CQ03648 457 aa7.05□□□□□ -1.28
TDP1YBR223C MET7Q08645 548 aa7.05□□□□□ -1.28
TDP1YBR223C HOS1Q12214 470 aa7.05□□□□□ -1.28
TDP1YBR223C STB3Q12427 513 aa7.05□□□□□ -1.28
TDP1YBR223C RRP36Q12481 300 aaPredicted RBP7.05□□□□□ -1.28
TDP1YBR223C RGS2Q99188 309 aa7.05□□□□□ -1.28
TDP1YBR223C ECM29P38737 1868 aa7.05□□□□□ -1.28
TDP1YBR223C SNA3P14359 133 aa7.05□□□□□ -1.28
TDP1YBR223C PYC2P32327 1180 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C STL1P39932 569 aa7.05□□□□□ -1.28
TDP1YBR223C MXR1P40029 184 aa7.05□□□□□ -1.28
TDP1YBR223C DPH1P40487 425 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C CHS6P40955 746 aa7.05□□□□□ -1.28
TDP1YBR223C RRT5P43607 289 aa7.05□□□□□ -1.28
TDP1YBR223C MNN11P46985 422 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C IML2P47031 731 aa7.05□□□□□ -1.28
TDP1YBR223C STB4P50104 949 aa7.05□□□□□ -1.28
TDP1YBR223C VPS9P54787 451 aa7.05□□□□□ -1.28
TDP1YBR223C SKY1Q03656 742 aa7.05□□□□□ -1.28
TDP1YBR223C TVP15Q03860 143 aa7.05□□□□□ -1.28
TDP1YBR223C TIF35Q04067 274 aaKnown RBP7.05□□□□□ -1.28
TDP1YBR223C TAF11Q04226 346 aa7.05□□□□□ -1.28
TDP1YBR223C BCP1Q06338 283 aa7.05□□□□□ -1.28
TDP1YBR223C PEX15Q08215 383 aa7.05□□□□□ -1.28
TDP1YBR223C NRT1Q08485 598 aa7.05□□□□□ -1.28
TDP1YBR223C YPR202WQ08993 238 aa7.05□□□□□ -1.28
TDP1YBR223C NKP1Q12493 238 aa7.05□□□□□ -1.28
TDP1YBR223C ADE2P21264 571 aaKnown RBP7.04□□□□□ -1.28
TDP1YBR223C YCL068CP25593 260 aa7.04□□□□□ -1.28
TDP1YBR223C GAC1P28006 793 aa7.04□□□□□ -1.28
TDP1YBR223C UTR2P32623 467 aa7.04□□□□□ -1.28
TDP1YBR223C CBF5P33322 483 aaKnown RBP RIP-Chip data7.04□□□□□ -1.28not detected
TDP1YBR223C KDX1P36005 433 aa7.04□□□□□ -1.28
TDP1YBR223C TSC10P38342 320 aa7.04□□□□□ -1.28
TDP1YBR223C OTU2P38747 307 aaKnown RBP7.04□□□□□ -1.28
TDP1YBR223C UTP8P53276 713 aaKnown RBP7.04□□□□□ -1.28
TDP1YBR223C NOP15P53927 220 aaPredicted RBP7.04□□□□□ -1.28
TDP1YBR223C YDL073WQ07454 984 aa7.04□□□□□ -1.28
TDP1YBR223C AAD15Q08361 143 aa7.04□□□□□ -1.28
TDP1YBR223C CBC2Q08920 208 aaKnown RBP RIP-Chip data7.04□□□□□ -1.28not detected
TDP1YBR223C SPE3Q12074 293 aaKnown RBP7.04□□□□□ -1.28
TDP1YBR223C EFG1Q3E705 233 aaKnown RBP7.04□□□□□ -1.28
TDP1YBR223C MPH2P0CD99 609 aa7.03□□□□□ -1.28
TDP1YBR223C SSA1P10591 642 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C MSD1P15179 658 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C HSP60P19882 572 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C VPS34P22543 875 aa7.03□□□□□ -1.28
TDP1YBR223C VPS3P23643 1011 aa7.03□□□□□ -1.28
TDP1YBR223C HRR25P29295 494 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C PHA2P32452 334 aa7.03□□□□□ -1.28
TDP1YBR223C ZUO1P32527 433 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C SIP2P34164 415 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C RDH54P38086 958 aa7.03□□□□□ -1.28
TDP1YBR223C SHE3P38272 425 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C BIT2P38346 545 aa7.03□□□□□ -1.28
TDP1YBR223C BSD2P38356 321 aa7.03□□□□□ -1.28
TDP1YBR223C SHU2P38957 223 aa7.03□□□□□ -1.28
TDP1YBR223C FMP33P46998 180 aa7.03□□□□□ -1.28
TDP1YBR223C TEL2P53038 688 aa7.03□□□□□ -1.28
TDP1YBR223C PEX31P53203 462 aa7.03□□□□□ -1.28
TDP1YBR223C IST1P53843 298 aaPredicted RBP7.03□□□□□ -1.28
TDP1YBR223C HMO1Q03973 246 aaKnown RBP7.03□□□□□ -1.28
TDP1YBR223C AAD4Q07747 329 aa7.03□□□□□ -1.28
TDP1YBR223C PAB1P04147 577 aaKnown RBP RIP-Chip data7.02□□□□□ -1.29not detected
TDP1YBR223C PDC5P16467 563 aaKnown RBP7.02□□□□□ -1.29
TDP1YBR223C PRP6P19735 899 aaPredicted RBP7.02□□□□□ -1.29
TDP1YBR223C NDI1P32340 513 aa7.02□□□□□ -1.29
TDP1YBR223C SPR1P32603 445 aa7.02□□□□□ -1.29
TDP1YBR223C HSP78P33416 811 aa7.02□□□□□ -1.29
TDP1YBR223C PPX1P38698 397 aa7.02□□□□□ -1.29
TDP1YBR223C RRN7P40992 514 aa7.02□□□□□ -1.29
TDP1YBR223C DIM1P41819 318 aaKnown RBP7.02□□□□□ -1.29
TDP1YBR223C MAF1P41910 395 aa7.02□□□□□ -1.29
TDP1YBR223C NUP84P52891 726 aa7.02□□□□□ -1.29
TDP1YBR223C ARI1P53111 347 aaKnown RBP7.02□□□□□ -1.29
TDP1YBR223C YGR016WP53209 190 aa7.02□□□□□ -1.29
TDP1YBR223C YNL134CP53912 376 aaKnown RBP7.02□□□□□ -1.29
TDP1YBR223C SLG1P54867 378 aa7.02□□□□□ -1.29
TDP1YBR223C ULP1Q02724 621 aa7.02□□□□□ -1.29
TDP1YBR223C RNY1Q02933 434 aaKnown RBP7.02□□□□□ -1.29
TDP1YBR223C DNL4Q08387 944 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms