RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 HNRNPCL1O60812 293 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 KCNA4P22459 653 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 GRAMD4Q6IC98 578 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 STAMBPL1Q96FJ0 436 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 BLMP54132 1417 aaPredicted RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 GOLGA8AA7E2F4 631 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 HMOX1P09601 288 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 RWDD2BP57060 319 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 TCP1P17987 556 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 TYW1Q9NV66 732 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 RPL13P26373 211 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 EIF3BP55884 814 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 MSH6P52701 1360 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 ZNF692Q9BU19 519 aaPredicted RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 EFHD1Q9BUP0 239 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 PDE11AQ9HCR9 933 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 KIF24Q5T7B8 1368 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 GAPVD1Q14C86 1478 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 RAD51AP2Q09MP3 1159 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 CTNNA1P35221 906 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 GNAQP50148 359 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 EMBQ6PCB8 327 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 MCF2L2Q86YR7 1114 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 SDCCAG3Q96C92 435 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 KDM2BQ8NHM5 1336 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 RAPGEF4Q8WZA2 1011 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 MMRN2Q9H8L6 949 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 CCDC124Q96CT7 223 aaKnown RBP9.75□□□□□ -0.85
TTC28-208ENST00000612946 LMBRD1Q9NUN5 540 aa9.75□□□□□ -0.85
TTC28-208ENST00000612946 HARSP12081 509 aaKnown RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 SLC30A9Q6PML9 568 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 TRIML1Q8N9V2 468 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 RUSC2Q8N2Y8 1516 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 STX2P32856 288 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 PHEXP78562 749 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 FANCCQ00597 558 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 APBB1IPQ7Z5R6 666 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 MINK1Q8N4C8 1332 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 NUTM2BA6NNL0 878 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 NUTM2EB1AL46 878 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 GUCY2CP25092 1073 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 BIRC3Q13489 604 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 PRXQ9BXM0 1461 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CALM1P0DP23 149 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CALM2P0DP24 149 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CALM3P0DP25 149 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 GCFC2P16383 781 aaKnown RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 ZNF76P36508 570 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CUL3Q13618 768 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 C20orf194Q5TEA3 1177 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CXorf56Q9H5V9 222 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 ARHGEF9O43307 516 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 NLRP7Q8WX94 980 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 LTV1Q96GA3 475 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 MORC2Q9Y6X9 1032 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 ATAD2BQ9ULI0 1458 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 TRIM75PA6NK02 468 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 ZNF213O14771 459 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 SDSP20132 328 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 USP5P45974 858 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 NLRP12P59046 1061 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 IRX5P78411 483 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 CNNM1Q9NRU3 951 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 ZRANB1Q9UGI0 708 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CCT5P48643 541 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 C6orf118Q5T5N4 469 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 CHGBP05060 677 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 TAF11Q15544 211 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 USP16Q9Y5T5 823 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 TACC3Q9Y6A5 838 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 SYNJ2O15056 1496 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 SNAPC4Q5SXM2 1469 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 MAP3K12Q12852 859 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 FNBP4Q8N3X1 1017 aaPredicted RBP9.74□□□□□ -0.85
TTC28-208ENST00000612946 HAUS4Q9H6D7 363 aa9.74□□□□□ -0.85
TTC28-208ENST00000612946 TMED1Q13445 227 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 GRK7Q8WTQ7 553 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 NAP1L4Q99733 375 aaKnown RBP9.73□□□□□ -0.85
TTC28-208ENST00000612946 STOML1Q9UBI4 398 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 STX10O60499 249 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 PNMA6AP0CW24 399 aaPredicted RBP9.73□□□□□ -0.85
TTC28-208ENST00000612946 ERCC5P28715 1186 aaPredicted RBP9.73□□□□□ -0.85
TTC28-208ENST00000612946 MUM1L1Q5H9M0 696 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 CBX8Q9HC52 389 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 CRYMQ14894 314 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 KIFAP3Q92845 792 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 IRAK4Q9NWZ3 460 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 EVA1CP58658 441 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 ST5P78524 1137 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 KARSQ15046 597 aaKnown RBP9.73□□□□□ -0.85
TTC28-208ENST00000612946 CNNM4Q6P4Q7 775 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 NESP48681 1621 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 SND1Q7KZF4 910 aaKnown RBP eCLIP9.73□□□□□ -0.85
TTC28-208ENST00000612946 CUL5Q93034 780 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 FAM135BQ49AJ0 1406 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 E9PMD0 336 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 IL9RQ01113 521 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 LRRC8AQ8IWT6 810 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 HSPA1LP34931 641 aa9.73□□□□□ -0.85
TTC28-208ENST00000612946 SLC9C1Q4G0N8 1177 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms