RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 MKRN1Q9UHC7 482 aaKnown RBP13.45□□□□□ -0.26
VMP1-207ENST00000588131 TACC3Q9Y6A5 838 aa13.45□□□□□ -0.26
VMP1-207ENST00000588131 GJA3Q9Y6H8 435 aa13.45□□□□□ -0.26
VMP1-207ENST00000588131 USP17L12C9JPN9 530 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 USP17L21D6R901 530 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 WDHD1O75717 1129 aaPredicted RBP13.44□□□□□ -0.26
VMP1-207ENST00000588131 CYP2D6P10635 497 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 PLCG2P16885 1265 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 CASTP20810 708 aaKnown RBP13.44□□□□□ -0.26
VMP1-207ENST00000588131 GMPSP49915 693 aaPredicted RBP13.44□□□□□ -0.26
VMP1-207ENST00000588131 PPARAQ07869 468 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 KRT32Q14532 448 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 PRMT6Q96LA8 375 aaPredicted RBP13.44□□□□□ -0.26
VMP1-207ENST00000588131 TM6SF1Q9BZW5 370 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 ZSWIM6Q9HCJ5 1215 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 HDAC9Q9UKV0 1011 aa13.44□□□□□ -0.26
VMP1-207ENST00000588131 FLT1P17948 1338 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 MINDY4BA8MYZ0 360 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 RPS12P25398 132 aaKnown RBP13.43□□□□□ -0.26
VMP1-207ENST00000588131 NEK4P51957 841 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 SLC4A8Q2Y0W8 1093 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 C9orf131Q5VYM1 1079 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 NKX2-3Q8TAU0 364 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 DDRGK1Q96HY6 314 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 NEK1Q96PY6 1258 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 TBC1D2Q9BYX2 928 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 DDX4Q9NQI0 724 aaKnown RBP13.43□□□□□ -0.26
VMP1-207ENST00000588131 INCENPQ9NQS7 918 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 SAP30BPQ9UHR5 308 aaKnown RBP13.43□□□□□ -0.26
VMP1-207ENST00000588131 ANAPC4Q9UJX5 808 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 MYH1P12882 1939 aa13.43□□□□□ -0.26
VMP1-207ENST00000588131 NEDD4P46934 1319 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 SPDYE2BA6NHP3 402 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 SPDYE6P0CI01 402 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 RPS6KB1P23443 525 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 PSMA5P28066 241 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 CACNB3P54284 484 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 ZNF280AP59817 542 aaPredicted RBP13.42□□□□□ -0.26
VMP1-207ENST00000588131 NFIAQ12857 509 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 PICALMQ13492 652 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 SBK1Q52WX2 424 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 BLOC1S2Q6QNY1 142 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 RUFY3Q7L099 469 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 STK11IPQ8N1F8 1099 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 OGFOD1Q8N543 542 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 SNX21Q969T3 373 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 TTC14Q96N46 770 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 TDRD3Q9H7E2 651 aaKnown RBP13.42□□□□□ -0.26
VMP1-207ENST00000588131 MCM9Q9NXL9 1143 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 ARPP21Q9UBL0 812 aaPredicted RBP13.42□□□□□ -0.26
VMP1-207ENST00000588131 CYP46A1Q9Y6A2 500 aa13.42□□□□□ -0.26
VMP1-207ENST00000588131 GOLGB1Q14789 3259 aaKnown RBP13.42□□□□□ -0.26
VMP1-207ENST00000588131 DLGAP5Q15398 846 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 AKNAD1Q5T1N1 836 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 C12orf60Q5U649 245 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 MICALL2Q8IY33 904 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 MTMR14Q8NCE2 650 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 STAG1Q8WVM7 1258 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 DPF2Q92785 391 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 ZBED3Q96IU2 234 aaPredicted RBP13.41□□□□□ -0.26
VMP1-207ENST00000588131 TCEANC2Q96MN5 208 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 MYOZ2Q9NPC6 264 aa13.41□□□□□ -0.26
VMP1-207ENST00000588131 CLRN2A0PK11 232 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 ST18O60284 1047 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 GRIN3BO60391 1043 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 EGFRP00533 1210 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 SLC4A3P48751 1232 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 ZFPM1Q8IX07 1006 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 MB21D2Q8IYB1 491 aaPredicted RBP13.4□□□□□ -0.26
VMP1-207ENST00000588131 GPC2Q8N158 579 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 NCOA7Q8NI08 942 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 IPO9Q96P70 1041 aaKnown RBP13.4□□□□□ -0.26
VMP1-207ENST00000588131 IDI2Q9BXS1 227 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 OSBPL5Q9H0X9 879 aaPredicted RBP13.4□□□□□ -0.26
VMP1-207ENST00000588131 PDRG1Q9NUG6 133 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 FAM198AQ9UFP1 575 aa13.4□□□□□ -0.26
VMP1-207ENST00000588131 CNOT7Q9UIV1 285 aaKnown RBP13.4□□□□□ -0.26
VMP1-207ENST00000588131 SIPA1L1O43166 1804 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 B4E1Z4 1266 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 DDNO94850 711 aaPredicted RBP13.39□□□□□ -0.27
VMP1-207ENST00000588131 POLR3DP05423 398 aaPredicted RBP13.39□□□□□ -0.27
VMP1-207ENST00000588131 PLCD1P51178 756 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 AK2P54819 239 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 ANTXR2P58335 489 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 EXOSC10Q01780 885 aaKnown RBP13.39□□□□□ -0.27
VMP1-207ENST00000588131 NBPF9Q3BBW0 867 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 RBM26Q5T8P6 1007 aaKnown RBP13.39□□□□□ -0.27
VMP1-207ENST00000588131 MFSD6Q6ZSS7 791 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 NOL8Q76FK4 1167 aaKnown RBP13.39□□□□□ -0.27
VMP1-207ENST00000588131 CHST3Q7LGC8 479 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 HSCBQ8IWL3 235 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 DYNLL2Q96FJ2 89 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 ZNF70Q9UC06 446 aaPredicted RBP13.39□□□□□ -0.27
VMP1-207ENST00000588131 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.39□□□□□ -0.27
VMP1-207ENST00000588131 ROBO3Q96MS0 1386 aa13.39□□□□□ -0.27
VMP1-207ENST00000588131 WNT10BO00744 389 aa13.38□□□□□ -0.27
VMP1-207ENST00000588131 HMGB1P09429 215 aaKnown RBP13.38□□□□□ -0.27
VMP1-207ENST00000588131 FGRP09769 529 aa13.38□□□□□ -0.27
VMP1-207ENST00000588131 MMP14P50281 582 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms