RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 DNTTIP2Q5QJE6 756 aaKnown RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 CCDC186Q7Z3E2 898 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 NUTM2AQ8IVF1 878 aaPredicted RBP11.7□□□□□ -0.54
VPS53-220ENST00000576149 CCDC144CPQ8IYA2 1237 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 SLC12A7Q9Y666 1083 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 ZNF804BA4D1E1 1349 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 STK36Q9NRP7 1315 aa11.7□□□□□ -0.54
VPS53-220ENST00000576149 COL4A1P02462 1669 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 COL5A3P25940 1745 aaPredicted RBP11.69□□□□□ -0.54
VPS53-220ENST00000576149 CCDC69A6NI79 296 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 CMA1P23946 247 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 ERFEQ4G0M1 354 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 DHX40Q8IX18 779 aaKnown RBP11.69□□□□□ -0.54
VPS53-220ENST00000576149 DRC7Q8IY82 874 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 MTA3Q9BTC8 594 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 MYL10Q9BUA6 226 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 BCORQ6W2J9 1755 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.69□□□□□ -0.54
VPS53-220ENST00000576149 U2AF2P26368 475 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS53-220ENST00000576149 ANKRD18AQ8IVF6 992 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 MIGA1Q8NAN2 632 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 LINC00116Q8NCU8 138 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 ARID3AQ99856 593 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 KIAA1468Q9P260 1216 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 NRBP1Q9UHY1 535 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 LTBP4Q8N2S1 1624 aa11.69□□□□□ -0.54
VPS53-220ENST00000576149 A0A087WWV3 80 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 BECN2A8MW95 431 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 PPP6R2O75170 966 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 WDHD1O75717 1129 aaPredicted RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 ZNF202O95125 648 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 FMNL1O95466 1100 aaPredicted RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 IFNAR1P17181 557 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 SSRP1Q08945 709 aaKnown RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 UBE4AQ14139 1066 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 C3orf67Q6ZVT6 689 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 CEP57L1Q8IYX8 460 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 ERCC4Q92889 916 aaPredicted RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 MRFAP1L1Q96HT8 127 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 NAT10Q9H0A0 1025 aaKnown RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 BSDC1Q9NW68 430 aaPredicted RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 CLIP2Q9UDT6 1046 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 ZNF831Q5JPB2 1677 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 CYP7A1P22680 504 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 TRIM29Q14134 588 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 ADGRA1Q86SQ6 560 aa11.68□□□□□ -0.54
VPS53-220ENST00000576149 RNF41Q9H4P4 317 aaPredicted RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 GNL3LQ9NVN8 582 aaKnown RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 IQSEC3Q9UPP2 1182 aaPredicted RBP11.68□□□□□ -0.54
VPS53-220ENST00000576149 RGL2O15211 777 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 RRP9O43818 475 aaKnown RBP11.67□□□□□ -0.54
VPS53-220ENST00000576149 PFKFB1P16118 471 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 GYG1P46976 350 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 SART3Q15020 963 aaKnown RBP11.67□□□□□ -0.54
VPS53-220ENST00000576149 PTPAQ15257 358 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 RRP12Q5JTH9 1297 aaKnown RBP11.67□□□□□ -0.54
VPS53-220ENST00000576149 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 MAP3K14Q99558 947 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS53-220ENST00000576149 SLC26A6Q9BXS9 759 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 DYNC1I1O14576 645 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 MARCKSP29966 332 aaPredicted RBP11.67□□□□□ -0.54
VPS53-220ENST00000576149 PPARAQ07869 468 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 GNL2Q13823 731 aaKnown RBP11.67□□□□□ -0.54
VPS53-220ENST00000576149 WTAPQ15007 396 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 TMTC2Q8N394 836 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 JMYQ8N9B5 988 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 WASF1Q92558 559 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 ZKSCAN3Q9BRR0 538 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 TOMM22Q9NS69 142 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 ABCF2Q9UG63 623 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 ANAPC4Q9UJX5 808 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 MINPP1Q9UNW1 487 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 CHD4Q14839 1912 aa11.67□□□□□ -0.54
VPS53-220ENST00000576149 COL1A1P02452 1464 aaPredicted RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 MROH7-TTC4A0A0A0MT08 1334 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 MAGEB6P1A0A0J9YX57 407 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 FAM237AA0A1B0GTK4 181 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 ERICH2A1L162 156 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 WTIPA6NIX2 430 aaPredicted RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 UBE2Q2LH0YL09 131 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 SLC3A2P08195 630 aaKnown RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 RCAN1P53805 252 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 RBM6P78332 1123 aaKnown RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 SLC10A5Q5PT55 438 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 AOPEPQ8N6M6 819 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 MYRIPQ8NFW9 859 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 TIGD1Q96MW7 591 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 BPIFA3Q9BQP9 254 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 RIOK1Q9BRS2 568 aaKnown RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 RAI14Q9P0K7 980 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 HPSEQ9Y251 543 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 CNTNAP4Q9C0A0 1308 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 LRMPQ12912 555 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 HSP90AA2PQ14568 343 aaPredicted RBP11.66□□□□□ -0.54
VPS53-220ENST00000576149 RTN1Q16799 776 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 CCDC144BQ3MJ40 725 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 CAVIN4Q5BKX8 364 aa11.66□□□□□ -0.54
VPS53-220ENST00000576149 SDR42E1Q8WUS8 393 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms