RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 MKRN1Q9UHC7 482 aaKnown RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 PATL2C9JE40 543 aaKnown RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 TDO2P48775 406 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 LIG3P49916 1009 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 HLFQ16534 295 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 WWC2Q6AWC2 1192 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 RABGGTAQ92696 567 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 BAG1Q99933 345 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-212ENST00000574799 DESI2Q9BSY9 194 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 CENPHQ9H3R5 247 aa10.97□□□□□ -0.65
CCDC40-212ENST00000574799 A0A087WZG4 1122 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 CNNM3Q8NE01 707 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 PPP2R2CQ9Y2T4 447 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 DNAJC10Q8IXB1 793 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 STK11IPQ8N1F8 1099 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 FAM107BQ9H098 131 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 FAM53CQ9NYF3 392 aa10.96□□□□□ -0.65
CCDC40-212ENST00000574799 POTEB2H3BUK9 544 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 TXLNAP40222 546 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 APOBRQ0VD83 1088 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 BRD3Q15059 726 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 HSP90AB3PQ58FF7 597 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 TNNI3KQ59H18 835 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 CRACR2AQ9BSW2 395 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 FPGT-TNNI3KV9GXZ4 949 aa10.96□□□□□ -0.66
CCDC40-212ENST00000574799 CCDC151A5D8V7 595 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 KIAA0754O94854 1291 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ERLIN2O94905 339 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 CYP19A1P11511 503 aaPredicted RBP10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ATP1A3P13637 1013 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 LRRC24Q50LG9 513 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 PACS2Q86VP3 889 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 DHX58Q96C10 678 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ZBTB3Q9H5J0 574 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 SCN7AQ01118 1682 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ARHGAP6O43182 974 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ATP6V1AP38606 617 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ZNF594Q96JF6 807 aaPredicted RBP10.95□□□□□ -0.66
CCDC40-212ENST00000574799 GOLPH3LQ9H4A5 285 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 KIAA1468Q9P260 1216 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 SPATA31A1Q5TZJ5 1347 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 LY75O60449 1722 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 FOXP2O15409 715 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ATP2B1P20020 1258 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 FOXR1Q6PIV2 292 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 LMBR1LQ6UX01 489 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 PPFIBP1Q86W92 1011 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 PUS3Q9BZE2 481 aaKnown RBP10.95□□□□□ -0.66
CCDC40-212ENST00000574799 BTAF1O14981 1849 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 ECM29Q5VYK3 1845 aa10.95□□□□□ -0.66
CCDC40-212ENST00000574799 PTPDC1A2A3K4 754 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 H3BQF6 201 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 EBAG9O00559 213 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 RESTQ13127 1097 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 RBM43Q6ZSC3 357 aaKnown RBP10.94□□□□□ -0.66
CCDC40-212ENST00000574799 UBN2Q6ZU65 1347 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 BCL9LQ86UU0 1499 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 COL24A1Q17RW2 1714 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 SHTN1A0MZ66 631 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 MCTP2Q6DN12 878 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 CEP112Q8N8E3 955 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 DBNDD2Q9BQY9 259 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 FAM204AQ9H8W3 233 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 C4AP0C0L4 1744 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 C4BP0C0L5 1744 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 CTAGE15A4D2H0 777 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 CTAGE8P0CG41 777 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 MARCKSP29966 332 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-212ENST00000574799 ADKP55263 362 aaKnown RBP10.94□□□□□ -0.66
CCDC40-212ENST00000574799 ZNF569Q5MCW4 686 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 CTAGE6Q86UF2 777 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 CTAGE4Q8IX94 777 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 AFAP1L1Q8TED9 768 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 GDAP1L1Q96MZ0 367 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 WDR24Q96S15 920 aa10.94□□□□□ -0.66
CCDC40-212ENST00000574799 HOOK1Q9UJC3 728 aaKnown RBP10.94□□□□□ -0.66
CCDC40-212ENST00000574799 PES1O00541 588 aaKnown RBP10.93□□□□□ -0.66
CCDC40-212ENST00000574799 CCDC93Q567U6 631 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 MMS22LQ6ZRQ5 1243 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 MAP4K1Q92918 833 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 FUT8Q9BYC5 575 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 NCOA5Q9HCD5 579 aaKnown RBP10.93□□□□□ -0.66
CCDC40-212ENST00000574799 RAI14Q9P0K7 980 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 PARP3Q9Y6F1 533 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 UTRNP46939 3433 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 A0A0G2JLW4 131 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 CCDC175P0C221 793 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 NDUFA8P51970 172 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 OTUD7BQ6GQQ9 843 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 EP400NLQ6ZTU2 488 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 CAGE1Q8TC20 777 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 RUFY1Q96T51 708 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 N4BP1O75113 896 aaKnown RBP10.93□□□□□ -0.66
CCDC40-212ENST00000574799 MYL5Q02045 173 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 EFCAB13Q8IY85 973 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 HMG20BQ9P0W2 317 aa10.93□□□□□ -0.66
CCDC40-212ENST00000574799 CSF1RP07333 972 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 ATP5JP18859 108 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 NEXNQ0ZGT2 675 aa10.92□□□□□ -0.66
CCDC40-212ENST00000574799 GBP6Q6ZN66 633 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms