RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FAM135BQ49AJ0 1406 aa8.18□□□□□ -1.1
VPS53-212ENST00000572259 A0A1W2PP55 124 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 SORBS3O60504 671 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 HSPA1LP34931 641 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 DAB2P98082 770 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 KIAA0319Q5VV43 1072 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 ELMSAN1Q6PJG2 1045 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 SLCO4C1Q6ZQN7 724 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 CEP120Q8N960 986 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 ACDQ96AP0 544 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 FAM161BQ96MY7 647 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 LATS2Q9NRM7 1088 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 RNF19AQ9NV58 838 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 STK26Q9P289 416 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 VTI1BQ9UEU0 232 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 PPME1Q9Y570 386 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 PTPRUQ92729 1446 aa8.17□□□□□ -1.1
VPS53-212ENST00000572259 LOC102724159A0A0B4J2E5 919 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 PIK3C2GO75747 1445 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 SMNDC1O75940 238 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS53-212ENST00000572259 EIF4BP23588 611 aaKnown RBP8.16□□□□□ -1.1
VPS53-212ENST00000572259 ERCC5P28715 1186 aaPredicted RBP8.16□□□□□ -1.1
VPS53-212ENST00000572259 DCCP43146 1447 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 MYOM2P54296 1465 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 PWP2Q15269 919 aaKnown RBP8.16□□□□□ -1.1
VPS53-212ENST00000572259 TMEM132EQ6IEE7 984 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 TMC4Q7Z404 712 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 XRN1Q8IZH2 1706 aaKnown RBP8.16□□□□□ -1.1
VPS53-212ENST00000572259 GALNT6Q8NCL4 622 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 ZNF526Q8TF50 670 aaPredicted RBP8.16□□□□□ -1.1
VPS53-212ENST00000572259 BCO2Q9BYV7 579 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 SUV39H2Q9H5I1 410 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 MYH16Q9H6N6 1097 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 TRAK1Q9UPV9 953 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 AK5Q9Y6K8 562 aa8.16□□□□□ -1.1
VPS53-212ENST00000572259 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.15□□□□□ -1.1
VPS53-212ENST00000572259 LAMC1P11047 1609 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 PTCH1Q13635 1447 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 LRPPRCP42704 1394 aaKnown RBP8.15□□□□□ -1.1
VPS53-212ENST00000572259 ABCC11Q96J66 1382 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 EPXP11678 715 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 PEAR1Q5VY43 1037 aaPredicted RBP8.15□□□□□ -1.1
VPS53-212ENST00000572259 CEP135Q66GS9 1140 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 TREML4Q6UXN2 200 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 ZNF662Q6ZS27 426 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 EDARADDQ8WWZ3 215 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 ZKSCAN3Q9BRR0 538 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 PBX4Q9BYU1 374 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 RASSF4Q9H2L5 321 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 LIN7BQ9HAP6 207 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 DZANK1Q9NVP4 752 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 POGKQ9P215 609 aa8.15□□□□□ -1.1
VPS53-212ENST00000572259 TRPA1O75762 1119 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 RGS9O75916 674 aaPredicted RBP8.14□□□□□ -1.11
VPS53-212ENST00000572259 SLURP2P0DP57 97 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 ACPPP15309 386 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 ATP11AP98196 1134 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 GRM2Q14416 872 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 PERM1Q5SV97 790 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 NXPE4Q6UWF7 544 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 PLD4Q96BZ4 506 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 SRCIN1Q9C0H9 1055 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 SMG9Q9H0W8 520 aaKnown RBP8.14□□□□□ -1.11
VPS53-212ENST00000572259 C12orf49Q9H741 205 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 PRDM16Q9HAZ2 1276 aa8.14□□□□□ -1.11
VPS53-212ENST00000572259 METTL14Q9HCE5 456 aaKnown RBP8.14□□□□□ -1.11
VPS53-212ENST00000572259 SETD1AO15047 1707 aaKnown RBP8.14□□□□□ -1.11
VPS53-212ENST00000572259 NRXN1Q9ULB1 1477 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 YTHDC2Q9H6S0 1430 aaKnown RBP8.13□□□□□ -1.11
VPS53-212ENST00000572259 ADGRL3Q9HAR2 1447 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 FAM177BA6PVY3 158 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 PDE2AO00408 941 aaPredicted RBP8.13□□□□□ -1.11
VPS53-212ENST00000572259 RAB11FIP3O75154 756 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 BCRP11274 1271 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 CCDC181Q5TID7 509 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 PSAPL1Q6NUJ1 521 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 OSBPL7Q9BZF2 842 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 FRRS1LQ9P0K9 344 aa8.13□□□□□ -1.11
VPS53-212ENST00000572259 PRAG1Q86YV5 1406 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 ROBO2Q9HCK4 1378 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 ROBO1Q9Y6N7 1651 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 OIP5O43482 229 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 AMPD1P23109 780 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 MAP3K10Q02779 954 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 TSNAXIP1Q2TAA8 658 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 GORABQ5T7V8 394 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 TMED8Q6PL24 325 aaPredicted RBP8.12□□□□□ -1.11
VPS53-212ENST00000572259 WAPLQ7Z5K2 1190 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 EXOC8Q8IYI6 725 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 TMEM102Q8N9M5 508 aaPredicted RBP8.12□□□□□ -1.11
VPS53-212ENST00000572259 ASAP3Q8TDY4 903 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 NUDT8Q8WV74 236 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 SIN3AQ96ST3 1273 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 MDFIQ99750 246 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 PCGF6Q9BYE7 350 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 FAM8A1Q9UBU6 413 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 TECPR2O15040 1411 aa8.12□□□□□ -1.11
VPS53-212ENST00000572259 FCGRTP55899 365 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 KANK3Q6NY19 840 aa8.11□□□□□ -1.11
VPS53-212ENST00000572259 DTHD1Q6ZMT9 781 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms