RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 DHX32Q7L7V1 743 aaKnown RBP16.51■□□□□ 0.23
CLK3-209ENST00000562670 MB21D2Q8IYB1 491 aaPredicted RBP16.51■□□□□ 0.23
CLK3-209ENST00000562670 TEX11Q8IYF3 940 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 NCOA7Q8NI08 942 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 MTA3Q9BTC8 594 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 AGXT2Q9BYV1 514 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 HDAC9Q9UKV0 1011 aa16.51■□□□□ 0.23
CLK3-209ENST00000562670 BAZ2AQ9UIF9 1905 aaKnown RBP16.51■□□□□ 0.23
CLK3-209ENST00000562670 SBF1O95248 1867 aa16.5■□□□□ 0.23
CLK3-209ENST00000562670 F8W031 263 aaPredicted RBP16.5■□□□□ 0.23
CLK3-209ENST00000562670 USP5P45974 858 aa16.5■□□□□ 0.23
CLK3-209ENST00000562670 TRDNQ13061 729 aa16.5■□□□□ 0.23
CLK3-209ENST00000562670 CTR9Q6PD62 1173 aa16.5■□□□□ 0.23
CLK3-209ENST00000562670 RALYLQ86SE5 291 aaKnown RBP16.5■□□□□ 0.23
CLK3-209ENST00000562670 PDRG1Q9NUG6 133 aa16.5■□□□□ 0.23
CLK3-209ENST00000562670 DAXXQ9UER7 740 aaPredicted RBP16.5■□□□□ 0.23
CLK3-209ENST00000562670 WDHD1O75717 1129 aaPredicted RBP16.49■□□□□ 0.23
CLK3-209ENST00000562670 SCNN1DP51172 638 aa16.49■□□□□ 0.23
CLK3-209ENST00000562670 EIF6P56537 245 aaKnown RBP16.49■□□□□ 0.23
CLK3-209ENST00000562670 EXOSC10Q01780 885 aaKnown RBP16.49■□□□□ 0.23
CLK3-209ENST00000562670 AMOTL1Q8IY63 956 aa16.49■□□□□ 0.23
CLK3-209ENST00000562670 OGFOD1Q8N543 542 aa16.49■□□□□ 0.23
CLK3-209ENST00000562670 DPF2Q92785 391 aa16.49■□□□□ 0.23
CLK3-209ENST00000562670 IDI2Q9BXS1 227 aa16.49■□□□□ 0.23
CLK3-209ENST00000562670 KRT23Q9C075 422 aa16.49■□□□□ 0.23
CLK3-209ENST00000562670 USP17L12C9JPN9 530 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 USP17L21D6R901 530 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 ORC4O43929 436 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 SLC3A2P08195 630 aaKnown RBP16.48■□□□□ 0.23
CLK3-209ENST00000562670 USP17L8P0C7I0 530 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 MCM5P33992 734 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 AK2P54819 239 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 ZNF280AP59817 542 aaPredicted RBP16.48■□□□□ 0.23
CLK3-209ENST00000562670 C12orf60Q5U649 245 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 CDC42EP5Q6NZY7 148 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 TGFBRAP1Q8WUH2 860 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 MCM9Q9NXL9 1143 aa16.48■□□□□ 0.23
CLK3-209ENST00000562670 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.48■□□□□ 0.23
CLK3-209ENST00000562670 NEDD4P46934 1319 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 SPDYE2BA6NHP3 402 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 SPDYE6P0CI01 402 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 YBX3P16989 372 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLK3-209ENST00000562670 CFAP100Q494V2 611 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 MFSD6Q6ZSS7 791 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 ARHGAP27Q6ZUM4 889 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 ZBED3Q96IU2 234 aaPredicted RBP16.47■□□□□ 0.23
CLK3-209ENST00000562670 ZSCAN31Q96LW9 406 aaPredicted RBP16.47■□□□□ 0.23
CLK3-209ENST00000562670 SH2B1Q9NRF2 756 aaPredicted RBP16.47■□□□□ 0.23
CLK3-209ENST00000562670 USP40Q9NVE5 1235 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 LIMCH1Q9UPQ0 1083 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 MYH1P12882 1939 aa16.47■□□□□ 0.23
CLK3-209ENST00000562670 ZC3H4Q9UPT8 1303 aaKnown RBP16.46■□□□□ 0.23
CLK3-209ENST00000562670 CPA1P15085 419 aa16.46■□□□□ 0.23
CLK3-209ENST00000562670 EVCP57679 992 aa16.46■□□□□ 0.23
CLK3-209ENST00000562670 CUL4AQ13619 759 aa16.46■□□□□ 0.23
CLK3-209ENST00000562670 TOB2Q14106 344 aaPredicted RBP16.46■□□□□ 0.23
CLK3-209ENST00000562670 FKBP1CQ5VVH2 108 aa16.46■□□□□ 0.23
CLK3-209ENST00000562670 TMX3Q96JJ7 454 aa16.46■□□□□ 0.23
CLK3-209ENST00000562670 ATRNL1Q5VV63 1379 aa16.46■□□□□ 0.23
CLK3-209ENST00000562670 MINDY4BA8MYZ0 360 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 ANTXR2P58335 489 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 CTDSPL2Q05D32 466 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 PDE4BQ07343 736 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 COL9A3Q14050 684 aaPredicted RBP16.45■□□□□ 0.22
CLK3-209ENST00000562670 MAPKAPK5Q8IW41 473 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 ESR2Q92731 530 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 INTS4Q96HW7 963 aaKnown RBP16.45■□□□□ 0.22
CLK3-209ENST00000562670 TMEM87BQ96K49 555 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 OSBPL5Q9H0X9 879 aaPredicted RBP16.45■□□□□ 0.22
CLK3-209ENST00000562670 ZNF287Q9HBT7 754 aa16.45■□□□□ 0.22
CLK3-209ENST00000562670 PRC1O43663 620 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 ENTPD3O75355 529 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 DLGAP5Q15398 846 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 GPC2Q8N158 579 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 EHD4Q9H223 541 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 DHX36Q9H2U1 1008 aaKnown RBP16.44■□□□□ 0.22
CLK3-209ENST00000562670 DDX4Q9NQI0 724 aaKnown RBP16.44■□□□□ 0.22
CLK3-209ENST00000562670 ZBTB12Q9Y330 459 aaPredicted RBP16.44■□□□□ 0.22
CLK3-209ENST00000562670 TACC3Q9Y6A5 838 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 ZNF541Q9H0D2 1346 aa16.44■□□□□ 0.22
CLK3-209ENST00000562670 B4E1Z4 1266 aa16.43■□□□□ 0.22
CLK3-209ENST00000562670 RBM5P52756 815 aaKnown RBP eCLIP16.43■□□□□ 0.22
CLK3-209ENST00000562670 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
CLK3-209ENST00000562670 Q6ZUG5 572 aa16.43■□□□□ 0.22
CLK3-209ENST00000562670 C16orf86Q6ZW13 317 aa16.43■□□□□ 0.22
CLK3-209ENST00000562670 TTC6Q86TZ1 520 aa16.43■□□□□ 0.22
CLK3-209ENST00000562670 TMOD2Q9NZR1 351 aa16.43■□□□□ 0.22
CLK3-209ENST00000562670 CYP2D7A0A087X1C5 515 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 GRIN3BO60391 1043 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 POLR3DP05423 398 aaPredicted RBP16.42■□□□□ 0.22
CLK3-209ENST00000562670 CYP2D6P10635 497 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 LIFRP42702 1097 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 GABPAQ06546 454 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 SART3Q15020 963 aaKnown RBP16.42■□□□□ 0.22
CLK3-209ENST00000562670 SGMS1Q86VZ5 419 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
CLK3-209ENST00000562670 MYOZ2Q9NPC6 264 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 FAM198AQ9UFP1 575 aa16.42■□□□□ 0.22
CLK3-209ENST00000562670 ANGEL1Q9UNK9 670 aaKnown RBP16.42■□□□□ 0.22
CLK3-209ENST00000562670 NID2Q14112 1375 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms