RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TNIP1Q15025 636 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 CDC42EP5Q6NZY7 148 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 MFSD6Q6ZSS7 791 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 RALYLQ86SE5 291 aaKnown RBP13.28□□□□□ -0.28
USP3-218ENST00000560202 MAPKAPK5Q8IW41 473 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 TCEANC2Q96MN5 208 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 HDAC9Q9UKV0 1011 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 FZD9O00144 591 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 USP17L8P0C7I0 530 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 LMNB1P20700 586 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 NOL8Q76FK4 1167 aaKnown RBP13.28□□□□□ -0.28
USP3-218ENST00000560202 MB21D2Q8IYB1 491 aaPredicted RBP13.28□□□□□ -0.28
USP3-218ENST00000560202 OGFOD1Q8N543 542 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 STAG1Q8WVM7 1258 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 RNF41Q9H4P4 317 aaPredicted RBP13.28□□□□□ -0.28
USP3-218ENST00000560202 CNNM2Q9H8M5 875 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 INCENPQ9NQS7 918 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 PCDHAC2Q9Y5I4 1007 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 TACC3Q9Y6A5 838 aa13.28□□□□□ -0.28
USP3-218ENST00000560202 PSME4Q14997 1843 aa13.27□□□□□ -0.28
USP3-218ENST00000560202 FLT1P17948 1338 aa13.27□□□□□ -0.28
USP3-218ENST00000560202 NEDD4P46934 1319 aa13.27□□□□□ -0.28
USP3-218ENST00000560202 SMIM22K7EJ46 135 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 SOCS7O14512 581 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 WDHD1O75717 1129 aaPredicted RBP13.27□□□□□ -0.29
USP3-218ENST00000560202 CYP2D6P10635 497 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 YBX3P16989 372 aaKnown RBP eCLIP13.27□□□□□ -0.29
USP3-218ENST00000560202 MCM5P33992 734 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 EIF6P56537 245 aaKnown RBP13.27□□□□□ -0.29
USP3-218ENST00000560202 ANKRD1Q15327 319 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 CFAP100Q494V2 611 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 C12orf60Q5U649 245 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 Q6ZUG5 572 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 AMOTL1Q8IY63 956 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 TMX3Q96JJ7 454 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 LIMCH1Q9UPQ0 1083 aa13.27□□□□□ -0.29
USP3-218ENST00000560202 LAMA4Q16363 1823 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 TIAM2Q8IVF5 1701 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 B4E1Z4 1266 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 SLC3A2P08195 630 aaKnown RBP13.26□□□□□ -0.29
USP3-218ENST00000560202 EVX2Q03828 476 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 TOB2Q14106 344 aaPredicted RBP13.26□□□□□ -0.29
USP3-218ENST00000560202 CHST3Q7LGC8 479 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 STK11IPQ8N1F8 1099 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 SPRYD3Q8NCJ5 442 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 LARP6Q9BRS8 491 aaKnown RBP13.26□□□□□ -0.29
USP3-218ENST00000560202 KRT23Q9C075 422 aa13.26□□□□□ -0.29
USP3-218ENST00000560202 SAP30BPQ9UHR5 308 aaKnown RBP13.26□□□□□ -0.29
USP3-218ENST00000560202 PRC1O43663 620 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 POLR3DP05423 398 aaPredicted RBP13.25□□□□□ -0.29
USP3-218ENST00000560202 FGRP09769 529 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 PCP11498 1178 aaKnown RBP13.25□□□□□ -0.29
USP3-218ENST00000560202 RPS12P25398 132 aaKnown RBP13.25□□□□□ -0.29
USP3-218ENST00000560202 ANTXR2P58335 489 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 FGD1P98174 961 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 PICALMQ13492 652 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 NKX2-3Q8TAU0 364 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 UBE2Q2Q8WVN8 375 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 PRMT6Q96LA8 375 aaPredicted RBP13.25□□□□□ -0.29
USP3-218ENST00000560202 LRRC2Q9BYS8 371 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 TOMM22Q9NS69 142 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 WDR19Q8NEZ3 1342 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 ADAMTSL1Q8N6G6 1762 aa13.25□□□□□ -0.29
USP3-218ENST00000560202 HSP90AA1P07900 732 aaKnown RBP13.24□□□□□ -0.29
USP3-218ENST00000560202 DLGAP5Q15398 846 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 SLC4A8Q2Y0W8 1093 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 RRP12Q5JTH9 1297 aaKnown RBP13.24□□□□□ -0.29
USP3-218ENST00000560202 CYB5R4Q7L1T6 521 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 FBXL16Q8N461 479 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 ZSCAN31Q96LW9 406 aaPredicted RBP13.24□□□□□ -0.29
USP3-218ENST00000560202 AGXT2Q9BYV1 514 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 DDX4Q9NQI0 724 aaKnown RBP13.24□□□□□ -0.29
USP3-218ENST00000560202 ZSWIM5Q9P217 1185 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 SPDYE2BA6NHP3 402 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 KDM4AO75164 1064 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 SPDYE6P0CI01 402 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 MMP14P50281 582 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 PLCD1P51178 756 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 NFIAQ12857 509 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 BRF1Q92994 677 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 IDI2Q9BXS1 227 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 TDRD3Q9H7E2 651 aaKnown RBP13.24□□□□□ -0.29
USP3-218ENST00000560202 TPCN1Q9ULQ1 816 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP3-218ENST00000560202 GJA3Q9Y6H8 435 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 ZNF541Q9H0D2 1346 aa13.24□□□□□ -0.29
USP3-218ENST00000560202 ORC4O43929 436 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 GMPSP49915 693 aaPredicted RBP13.23□□□□□ -0.29
USP3-218ENST00000560202 CACNB3P54284 484 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 PDE4BQ07343 736 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 CUL4AQ13619 759 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 MTMR14Q8NCE2 650 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 ESR2Q92731 530 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 DPF2Q92785 391 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 OSBPL5Q9H0X9 879 aaPredicted RBP13.23□□□□□ -0.29
USP3-218ENST00000560202 SH2B1Q9NRF2 756 aaPredicted RBP13.23□□□□□ -0.29
USP3-218ENST00000560202 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 SRCAPQ6ZRS2 3230 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 ROBO3Q96MS0 1386 aa13.23□□□□□ -0.29
USP3-218ENST00000560202 BAZ2AQ9UIF9 1905 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms