RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ELP1O95163 1332 aa14.77□□□□□ -0.04
SHMT2-229ENST00000557348 NID2Q14112 1375 aa14.77□□□□□ -0.04
SHMT2-229ENST00000557348 B4E1Z4 1266 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 BAG6P46379 1132 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 TMEM67Q5HYA8 995 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 AMOTL1Q8IY63 956 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 MASTLQ96GX5 879 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 ZKSCAN5Q9Y2L8 839 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 SUGT1Q9Y2Z0 365 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 NEDD4P46934 1319 aa14.77□□□□□ -0.05
SHMT2-229ENST00000557348 CCDC69A6NI79 296 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 WTIPA6NIX2 430 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-229ENST00000557348 PRKAB2O43741 272 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 SRGNP10124 158 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 PLCG2P16885 1265 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 METAP2P50579 478 aaKnown RBP eCLIP14.76□□□□□ -0.051e-6■■■□□ 16.1
SHMT2-229ENST00000557348 SBK1Q52WX2 424 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 UTP14CQ5TAP6 766 aaKnown RBP14.76□□□□□ -0.05
SHMT2-229ENST00000557348 CHST3Q7LGC8 479 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 DEFB132Q7Z7B7 95 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 ADGRA1Q86SQ6 560 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 CD209Q9NNX6 404 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 STK32BQ9NY57 414 aa14.76□□□□□ -0.05
SHMT2-229ENST00000557348 CCDC196A0A1B0GTZ2 297 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 IFIT3O14879 490 aaKnown RBP14.75□□□□□ -0.05
SHMT2-229ENST00000557348 ZBTB43O43298 467 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 JAK2O60674 1132 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 KDM4AO75164 1064 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 LETM1O95202 739 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-229ENST00000557348 MMP10P09238 476 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 FGRP09769 529 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 PRDX5P30044 214 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 CCT2P78371 535 aaKnown RBP14.75□□□□□ -0.05
SHMT2-229ENST00000557348 APOA5Q6Q788 366 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 SASS6Q6UVJ0 657 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 NFXL1Q6ZNB6 911 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 CYB5R4Q7L1T6 521 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 CDC37L1Q7L3B6 337 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 USP48Q86UV5 1035 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 TXNRD3Q86VQ6 643 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 TBC1D16Q8TBP0 767 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 IGDCC4Q8TDY8 1250 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 UBAC1Q9BSL1 405 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 COA1Q9GZY4 146 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 CFAP45Q9UL16 551 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 SLC12A7Q9Y666 1083 aa14.75□□□□□ -0.05
SHMT2-229ENST00000557348 CTDNEP1O95476 244 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 PPP4CP60510 307 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 CTDSPL2Q05D32 466 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 CAVIN1Q6NZI2 390 aaKnown RBP14.74□□□□□ -0.05
SHMT2-229ENST00000557348 EYA3Q99504 573 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 LY9Q9HBG7 655 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 TOMM22Q9NS69 142 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 HPS5Q9UPZ3 1129 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 CCDC88AQ3V6T2 1871 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 FAM205AQ6ZU69 1335 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 ORC4O43929 436 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 WTAPQ15007 396 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 SLC15A2Q16348 729 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 STYK1Q6J9G0 422 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 IQCA1Q86XH1 822 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 SDR42E1Q8WUS8 393 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 WASF1Q92558 559 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 ZSWIM5Q9P217 1185 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 CNPY2Q9Y2B0 182 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 QSER1Q2KHR3 1735 aa14.74□□□□□ -0.05
SHMT2-229ENST00000557348 STK36Q9NRP7 1315 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 C6orf229H3BNL8 230 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 DNM1Q05193 864 aaKnown RBP14.73□□□□□ -0.05
SHMT2-229ENST00000557348 PDE4BQ07343 736 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 CCDC178Q5BJE1 867 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 GPT2Q8TD30 523 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 ZNF384Q8TF68 577 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 DDX11Q96FC9 970 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 PRIMPOLQ96LW4 560 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 ZNF396Q96N95 335 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-229ENST00000557348 ZNF287Q9HBT7 754 aa14.73□□□□□ -0.05
SHMT2-229ENST00000557348 DCP1AQ9NPI6 582 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-229ENST00000557348 AATFQ9NY61 560 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHMT2-229ENST00000557348 LTBP1Q14766 1721 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 MROH7-TTC4A0A0A0MT08 1334 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 GOLGA8AA7E2F4 631 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 MINDY4BA8MYZ0 360 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 DYNLL1P63167 89 aaKnown RBP14.72□□□□□ -0.05
SHMT2-229ENST00000557348 RESTQ13127 1097 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 ZSCAN23Q3MJ62 389 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 BRAPQ7Z569 592 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 MPNDQ8N594 471 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 FAM163AQ96GL9 167 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-229ENST00000557348 CAMKK2Q96RR4 588 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 NCOA5Q9HCD5 579 aaKnown RBP14.72□□□□□ -0.05
SHMT2-229ENST00000557348 ORC3Q9UBD5 711 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-229ENST00000557348 CHD4Q14839 1912 aa14.72□□□□□ -0.05
SHMT2-229ENST00000557348 FIBPO43427 364 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 CALM1P0DP23 149 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 CALM2P0DP24 149 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 CALM3P0DP25 149 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 UVSSAQ2YD98 709 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 GRIPAP1Q4V328 841 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 RRP12Q5JTH9 1297 aaKnown RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms