RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 BSDC1Q9NW68 430 aaPredicted RBP20.9■□□□□ 0.94
VIM-209ENST00000544301 NRBP1Q9UHY1 535 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 A0A1B0GUL6 1792 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 CMA1P23946 247 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 CDC25BP30305 580 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 SSRP1Q08945 709 aaKnown RBP20.9■□□□□ 0.94
VIM-209ENST00000544301 UBE4AQ14139 1066 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 SLC26A6Q9BXS9 759 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 GNL3LQ9NVN8 582 aaKnown RBP20.9■□□□□ 0.94
VIM-209ENST00000544301 WDHD1O75717 1129 aaPredicted RBP20.89■□□□□ 0.94
VIM-209ENST00000544301 FMNL1O95466 1100 aaPredicted RBP20.89■□□□□ 0.94
VIM-209ENST00000544301 U2AF2P26368 475 aaKnown RBP eCLIP20.89■□□□□ 0.94
VIM-209ENST00000544301 TRIM29Q14134 588 aa20.89■□□□□ 0.94
VIM-209ENST00000544301 FAM98CQ17RN3 349 aaKnown RBP20.89■□□□□ 0.94
VIM-209ENST00000544301 CEP57L1Q8IYX8 460 aa20.89■□□□□ 0.94
VIM-209ENST00000544301 TOMM22Q9NS69 142 aa20.89■□□□□ 0.94
VIM-209ENST00000544301 KIAA1468Q9P260 1216 aa20.89■□□□□ 0.94
VIM-209ENST00000544301 ABCF2Q9UG63 623 aa20.89■□□□□ 0.94
VIM-209ENST00000544301 UBE2Q2LH0YL09 131 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 IFNAR1P17181 557 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 KCNQ4P56696 695 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 GNL2Q13823 731 aaKnown RBP20.89■□□□□ 0.93
VIM-209ENST00000544301 SART3Q15020 963 aaKnown RBP20.89■□□□□ 0.93
VIM-209ENST00000544301 ZKSCAN3Q9BRR0 538 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 CLIP2Q9UDT6 1046 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 TAOK2Q9UL54 1235 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 MINPP1Q9UNW1 487 aa20.89■□□□□ 0.93
VIM-209ENST00000544301 COL1A1P02452 1464 aaPredicted RBP20.89■□□□□ 0.93
VIM-209ENST00000544301 BECN2A8MW95 431 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 ZNF202O95125 648 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 PFKFB1P16118 471 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 MARCKSP29966 332 aaPredicted RBP20.88■□□□□ 0.93
VIM-209ENST00000544301 PPARAQ07869 468 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 WTAPQ15007 396 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 MTA3Q9BTC8 594 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.88■□□□□ 0.93
VIM-209ENST00000544301 RNF41Q9H4P4 317 aaPredicted RBP20.88■□□□□ 0.93
VIM-209ENST00000544301 RAI14Q9P0K7 980 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 TAF1P21675 1872 aa20.88■□□□□ 0.93
VIM-209ENST00000544301 MAGEB6P1A0A0J9YX57 407 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 PTPAQ15257 358 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 BICDL1Q6ZP65 573 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 STK11IPQ8N1F8 1099 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 MAP3K14Q99558 947 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 MROH7-TTC4A0A0A0MT08 1334 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 CNTNAP4Q9C0A0 1308 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 CASZ1Q86V15 1759 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 PPP6R2O75170 966 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 SLC10A5Q5PT55 438 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 TBC1D9BQ66K14 1250 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 SDR42E1Q8WUS8 393 aa20.87■□□□□ 0.93
VIM-209ENST00000544301 NAT10Q9H0A0 1025 aaKnown RBP20.87■□□□□ 0.93
VIM-209ENST00000544301 RTN1Q16799 776 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 CAVIN4Q5BKX8 364 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 SMIM5Q71RC9 77 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 TMTC2Q8N394 836 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 WASF1Q92558 559 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 MRFAP1L1Q96HT8 127 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 BCL2L12Q9HB09 334 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 ANAPC4Q9UJX5 808 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 ERICH2A1L162 156 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 RGL2O15211 777 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 LRMPQ12912 555 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 AOPEPQ8N6M6 819 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 CELF1Q92879 486 aaKnown RBP20.86■□□□□ 0.93
VIM-209ENST00000544301 FBXW7Q969H0 707 aa20.86■□□□□ 0.93
VIM-209ENST00000544301 RIOK1Q9BRS2 568 aaKnown RBP20.86■□□□□ 0.93
VIM-209ENST00000544301 SLC3A2P08195 630 aaKnown RBP20.85■□□□□ 0.93
VIM-209ENST00000544301 GUCY1A2P33402 732 aa20.85■□□□□ 0.93
VIM-209ENST00000544301 PIP4K2BP78356 416 aa20.85■□□□□ 0.93
VIM-209ENST00000544301 JMYQ8N9B5 988 aa20.85■□□□□ 0.93
VIM-209ENST00000544301 FAM84BQ96KN1 310 aaPredicted RBP20.85■□□□□ 0.93
VIM-209ENST00000544301 CACNA1SQ13698 1873 aa20.85■□□□□ 0.93
VIM-209ENST00000544301 SCN7AQ01118 1682 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 MINDY4BA8MYZ0 360 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 GTF2E1P29083 439 aaPredicted RBP20.84■□□□□ 0.93
VIM-209ENST00000544301 CCDC144BQ3MJ40 725 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 NBPF11Q86T75 865 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 RCAN1P53805 252 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 DPCR1Q3MIW9 517 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 SHC4Q6S5L8 630 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 PTF1AQ7RTS3 328 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 PRIMPOLQ96LW4 560 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 HPSEQ9Y251 543 aa20.84■□□□□ 0.93
VIM-209ENST00000544301 RBM6P78332 1123 aaKnown RBP20.83■□□□□ 0.93
VIM-209ENST00000544301 ZRSR1Q15695 479 aaKnown RBP20.83■□□□□ 0.93
VIM-209ENST00000544301 TRIM22Q8IYM9 498 aa20.83■□□□□ 0.93
VIM-209ENST00000544301 TIGD1Q96MW7 591 aa20.83■□□□□ 0.93
VIM-209ENST00000544301 BPIFA3Q9BQP9 254 aa20.83■□□□□ 0.93
VIM-209ENST00000544301 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.83■□□□□ 0.93
VIM-209ENST00000544301 DYNC1I1O14576 645 aa20.83■□□□□ 0.92
VIM-209ENST00000544301 RRP9O43818 475 aaKnown RBP20.83■□□□□ 0.92
VIM-209ENST00000544301 MMP1P03956 469 aa20.83■□□□□ 0.92
VIM-209ENST00000544301 SYKP43405 635 aa20.83■□□□□ 0.92
VIM-209ENST00000544301 DYNLL1P63167 89 aaKnown RBP20.83■□□□□ 0.92
VIM-209ENST00000544301 NOSTRINQ8IVI9 506 aa20.83■□□□□ 0.92
VIM-209ENST00000544301 ZNF654Q8IZM8 581 aa20.83■□□□□ 0.92
VIM-209ENST00000544301 CRACR2BQ8N4Y2 399 aaPredicted RBP20.83■□□□□ 0.92
VIM-209ENST00000544301 ESR2Q92731 530 aa20.83■□□□□ 0.92
VIM-209ENST00000544301 UBAC1Q9BSL1 405 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms