RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	SLK	Q9H2G2	1235 aa	Predicted RBP	13.28	□□□□□ -0.28
APTX-223	ENST00000479656	MCM9	Q9NXL9	1143 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	LIMCH1	Q9UPQ0	1083 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	LTBP3	Q9NS15	1303 aa		13.28	□□□□□ -0.28
APTX-223	ENST00000479656	HSP90AA1	P07900	732 aa	Known RBP	13.27	□□□□□ -0.28
APTX-223	ENST00000479656	CYP2D6	P10635	497 aa		13.27	□□□□□ -0.28
APTX-223	ENST00000479656	HDLBP	Q00341	1268 aa	Known RBP	13.27	□□□□□ -0.28
APTX-223	ENST00000479656	SLC4A8	Q2Y0W8	1093 aa		13.27	□□□□□ -0.28
APTX-223	ENST00000479656	MFSD6	Q6ZSS7	791 aa		13.27	□□□□□ -0.28
APTX-223	ENST00000479656	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.27	□□□□□ -0.28
APTX-223	ENST00000479656	USP40	Q9NVE5	1235 aa		13.27	□□□□□ -0.28
APTX-223	ENST00000479656	ANAPC4	Q9UJX5	808 aa		13.27	□□□□□ -0.28
APTX-223	ENST00000479656	NEDD4	P46934	1319 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	ZNF646	O15015	1829 aa	Predicted RBP	13.27	□□□□□ -0.29
APTX-223	ENST00000479656		B4E1Z4	1266 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	ANKRD1	Q15327	319 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	SBK1	Q52WX2	424 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	CDC42EP5	Q6NZY7	148 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	STAG1	Q8WVM7	1258 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	ZDHHC15	Q96MV8	337 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	TPCN1	Q9ULQ1	816 aa		13.27	□□□□□ -0.29
APTX-223	ENST00000479656	MYO3B	Q8WXR4	1341 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	MCM5	P33992	734 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	FGD1	P98174	961 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	RRP12	Q5JTH9	1297 aa	Known RBP	13.26	□□□□□ -0.29
APTX-223	ENST00000479656	CIAPIN1	Q6FI81	312 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	CYB5R4	Q7L1T6	521 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	GML	Q99445	158 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	TOMM22	Q9NS69	142 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.26	□□□□□ -0.29
APTX-223	ENST00000479656	SAP30BP	Q9UHR5	308 aa	Known RBP	13.26	□□□□□ -0.29
APTX-223	ENST00000479656	SERPINA10	Q9UK55	444 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.26	□□□□□ -0.29
APTX-223	ENST00000479656	LAMA4	Q16363	1823 aa		13.26	□□□□□ -0.29
APTX-223	ENST00000479656	ARFGEF1	Q9Y6D6	1849 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	PRC1	O43663	620 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	LARGE1	O95461	756 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	ANTXR2	P58335	489 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	C12orf60	Q5U649	245 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	BRF1	Q92994	677 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	KRT23	Q9C075	422 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	RNF41	Q9H4P4	317 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-223	ENST00000479656	CNNM2	Q9H8M5	875 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	ZSWIM5	Q9P217	1185 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	KDM4A	O75164	1064 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	POLR3D	P05423	398 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-223	ENST00000479656	PICALM	Q13492	652 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	CUL4A	Q13619	759 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	ME3	Q16798	604 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	CFAP100	Q494V2	611 aa		13.25	□□□□□ -0.29
APTX-223	ENST00000479656	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-223	ENST00000479656	GPHN	Q9NQX3	736 aa	Predicted RBP	13.25	□□□□□ -0.29
APTX-223	ENST00000479656	FLT1	P17948	1338 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	ADAMTSL1	Q8N6G6	1762 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	PRDM1	O75626	825 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	WDHD1	O75717	1129 aa	Predicted RBP	13.24	□□□□□ -0.29
APTX-223	ENST00000479656	PLCD1	P51178	756 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	TNIP1	Q15025	636 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	OGFOD1	Q8N543	542 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	AGBL3	Q8NEM8	1001 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	PRMT6	Q96LA8	375 aa	Predicted RBP	13.24	□□□□□ -0.29
APTX-223	ENST00000479656	AGXT2	Q9BYV1	514 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	DDX4	Q9NQI0	724 aa	Known RBP	13.24	□□□□□ -0.29
APTX-223	ENST00000479656	HDAC9	Q9UKV0	1011 aa		13.24	□□□□□ -0.29
APTX-223	ENST00000479656	APOBR	Q0VD83	1088 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	AMOTL1	Q8IY63	956 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	DYNLL2	Q96FJ2	89 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	TDRD3	Q9H7E2	651 aa	Known RBP	13.23	□□□□□ -0.29
APTX-223	ENST00000479656	PSME4	Q14997	1843 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	FZD9	O00144	591 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	SLC3A2	P08195	630 aa	Known RBP	13.23	□□□□□ -0.29
APTX-223	ENST00000479656	FGR	P09769	529 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	YBX3	P16989	372 aa	Known RBP eCLIP	13.23	□□□□□ -0.29
APTX-223	ENST00000479656	CACNB3	P54284	484 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	EIF6	P56537	245 aa	Known RBP	13.23	□□□□□ -0.29
APTX-223	ENST00000479656	NFIA	Q12857	509 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	STK3	Q13188	491 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	NECAB1	Q8N987	351 aa		13.23	□□□□□ -0.29
APTX-223	ENST00000479656	CCDC83	Q8IWF9	413 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	FBXL16	Q8N461	479 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	IGDCC4	Q8TDY8	1250 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	ESR2	Q92731	530 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	ZKSCAN3	Q9BRR0	538 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.22	□□□□□ -0.29
APTX-223	ENST00000479656	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.22	□□□□□ -0.29
APTX-223	ENST00000479656	GJA3	Q9Y6H8	435 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	TIAM2	Q8IVF5	1701 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	WDR19	Q8NEZ3	1342 aa		13.22	□□□□□ -0.29
APTX-223	ENST00000479656	RANBP6	O60518	1105 aa	Known RBP	13.21	□□□□□ -0.29
APTX-223	ENST00000479656	PC	P11498	1178 aa	Known RBP	13.21	□□□□□ -0.29
APTX-223	ENST00000479656	LMNB1	P20700	586 aa		13.21	□□□□□ -0.29
APTX-223	ENST00000479656	PDE4B	Q07343	736 aa		13.21	□□□□□ -0.29
APTX-223	ENST00000479656	DLGAP5	Q15398	846 aa		13.21	□□□□□ -0.29
APTX-223	ENST00000479656	ZFPM1	Q8IX07	1006 aa		13.21	□□□□□ -0.29
APTX-223	ENST00000479656	TMEM87B	Q96K49	555 aa		13.21	□□□□□ -0.29
APTX-223	ENST00000479656	CDK5RAP2	Q96SN8	1893 aa		13.21	□□□□□ -0.29
APTX-223	ENST00000479656	SHTN1	A0MZ66	631 aa		13.21	□□□□□ -0.3
APTX-223	ENST00000479656	IFIT3	O14879	490 aa	Known RBP	13.21	□□□□□ -0.3
APTX-223	ENST00000479656	DTNB	O60941	627 aa		13.21	□□□□□ -0.3
APTX-223	ENST00000479656	DDIT3	P35638	169 aa		13.21	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms