RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 RAB6AP20340 208 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 ADMP35318 185 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 RALBP1Q15311 655 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 POU4F3Q15319 338 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 SPRED3Q2MJR0 410 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 EZH1Q92800 747 aaPredicted RBP7.05□□□□□ -1.28
VPS41-209ENST00000457055 SGSM3Q96HU1 749 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 DRC1Q96MC2 740 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 TCF12Q99081 682 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 CHMP4BQ9H444 224 aaKnown RBP7.05□□□□□ -1.28
VPS41-209ENST00000457055 IGSF5Q9NSI5 407 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 ACTL7BQ9Y614 415 aa7.05□□□□□ -1.28
VPS41-209ENST00000457055 H3BRB1 525 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 CYP26A1O43174 497 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 CTSBP07858 339 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 VSIG10LQ86VR7 867 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 HIRIP3Q9BW71 556 aaPredicted RBP7.04□□□□□ -1.28
VPS41-209ENST00000457055 TUT1Q9H6E5 874 aaKnown RBP7.04□□□□□ -1.28
VPS41-209ENST00000457055 CCDC39Q9UFE4 941 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 EGFL7Q9UHF1 273 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 CLASP1Q7Z460 1538 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 GAPVD1Q14C86 1478 aa7.04□□□□□ -1.28
VPS41-209ENST00000457055 WIZO95785 1651 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 FAM170BA6NMN3 283 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 ICMTO60725 284 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 PRNPP04156 253 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 CNGB1Q14028 1251 aaPredicted RBP7.03□□□□□ -1.28
VPS41-209ENST00000457055 MAP7Q14244 749 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 AKAP4Q5JQC9 854 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 USPL1Q5W0Q7 1092 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 DYMQ7RTS9 669 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 GLYCTKQ8IVS8 523 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 DDX54Q8TDD1 881 aaKnown RBP7.03□□□□□ -1.28
VPS41-209ENST00000457055 CORO1BQ9BR76 489 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 ZFYVE1Q9HBF4 777 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 RAD18Q9NS91 495 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 AP4E1Q9UPM8 1137 aa7.03□□□□□ -1.28
VPS41-209ENST00000457055 UNCXA6NJT0 531 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 B3GALT4O96024 378 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 NFICP08651 508 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 YBX3P16989 372 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS41-209ENST00000457055 B4GALNT3Q6L9W6 998 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 APBB1IPQ7Z5R6 666 aaPredicted RBP7.02□□□□□ -1.29
VPS41-209ENST00000457055 FBXL18Q96ME1 805 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 TRIM56Q9BRZ2 755 aaKnown RBP7.02□□□□□ -1.29
VPS41-209ENST00000457055 KRTAP9-9Q9BYP9 154 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 KRTAP9-4Q9BYQ2 154 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 SUGT1Q9Y2Z0 365 aa7.02□□□□□ -1.29
VPS41-209ENST00000457055 CFTRP13569 1480 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 NDUFB5O43674 189 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 ECEL1O95672 775 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 SERPINB4P48594 390 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 AXDND1Q5T1B0 1012 aaPredicted RBP7.01□□□□□ -1.29
VPS41-209ENST00000457055 KIAA0319Q5VV43 1072 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 DUSP27Q5VZP5 1158 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 TP53INP2Q8IXH6 220 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 MICAL1Q8TDZ2 1067 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 MORC4Q8TE76 937 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 GATA6Q92908 595 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 EHD4Q9H223 541 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 SEMA6CQ9H3T2 930 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 ZNF576Q9H609 170 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 FAM105AQ9NUU6 356 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 BSDC1Q9NW68 430 aaPredicted RBP7.01□□□□□ -1.29
VPS41-209ENST00000457055 USTQ9Y2C2 406 aa7.01□□□□□ -1.29
VPS41-209ENST00000457055 DISP3Q9P2K9 1392 aa7□□□□□ -1.29
VPS41-209ENST00000457055 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7□□□□□ -1.29
VPS41-209ENST00000457055 CALRP27797 417 aaKnown RBP7□□□□□ -1.29
VPS41-209ENST00000457055 CYP27A1Q02318 531 aa7□□□□□ -1.29
VPS41-209ENST00000457055 ORC1Q13415 861 aa7□□□□□ -1.29
VPS41-209ENST00000457055 NFXL1Q6ZNB6 911 aa7□□□□□ -1.29
VPS41-209ENST00000457055 UBA5Q9GZZ9 404 aa7□□□□□ -1.29
VPS41-209ENST00000457055 ACSS3Q9H6R3 686 aa7□□□□□ -1.29
VPS41-209ENST00000457055 LRRC4CQ9HCJ2 640 aa7□□□□□ -1.29
VPS41-209ENST00000457055 NPHS2Q9NP85 383 aa7□□□□□ -1.29
VPS41-209ENST00000457055 SYNJ2O15056 1496 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 CPNE3O75131 537 aaKnown RBP6.99□□□□□ -1.29
VPS41-209ENST00000457055 ITPKAP23677 461 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 ASPAP45381 313 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 KCNA1Q09470 495 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 PDE3BQ13370 1112 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 PDE3AQ14432 1141 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 TSHZ1Q6ZSZ6 1077 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 ZNF765Q7L2R6 523 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 NME8Q8N427 588 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 FLCNQ8NFG4 579 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 SREK1Q8WXA9 508 aaKnown RBP6.99□□□□□ -1.29
VPS41-209ENST00000457055 TOPBP1Q92547 1522 aa6.99□□□□□ -1.29
VPS41-209ENST00000457055 TARBP1Q13395 1621 aaKnown RBP6.98□□□□□ -1.29
VPS41-209ENST00000457055 RINLQ6ZS11 566 aa6.98□□□□□ -1.29
VPS41-209ENST00000457055 DAGLAQ9Y4D2 1042 aa6.98□□□□□ -1.29
VPS41-209ENST00000457055 ADGRL1O94910 1474 aa6.98□□□□□ -1.29
VPS41-209ENST00000457055 KDM6BO15054 1643 aa6.98□□□□□ -1.29
VPS41-209ENST00000457055 ANP32CO43423 234 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 AOC2O75106 756 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 ARHGAP4P98171 946 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 ECM1Q16610 540 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 LONRF3Q496Y0 759 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 CASC1Q6TDU7 716 aa6.97□□□□□ -1.29
VPS41-209ENST00000457055 CBLL1Q75N03 491 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms