RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 AEBP2Q6ZN18 517 aaPredicted RBP25.17■■□□□ 1.62
VPS41-209ENST00000457055 CHIC1Q5VXU3 224 aa24.03■■□□□ 1.44
VPS41-209ENST00000457055 SENP3Q9H4L4 574 aaPredicted RBP21.48■■□□□ 1.03
VPS41-209ENST00000457055 PHF23Q9BUL5 403 aaPredicted RBP21.2■□□□□ 0.98
VPS41-209ENST00000457055 FOXD1Q16676 465 aa19.99■□□□□ 0.79
VPS41-209ENST00000457055 PLPPR3Q6T4P5 718 aa19.27■□□□□ 0.68
VPS41-209ENST00000457055 PPP6R1Q9UPN7 881 aa18.77■□□□□ 0.6
VPS41-209ENST00000457055 PIAS4Q8N2W9 510 aaPredicted RBP18.74■□□□□ 0.59
VPS41-209ENST00000457055 ADRA2BP18089 450 aa18.73■□□□□ 0.59
VPS41-209ENST00000457055 MSH5O43196 834 aa18.68■□□□□ 0.58
VPS41-209ENST00000457055 POTEDQ86YR6 584 aa18.03■□□□□ 0.48
VPS41-209ENST00000457055 MAPK8IP2Q13387 824 aaPredicted RBP17.16■□□□□ 0.34
VPS41-209ENST00000457055 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
VPS41-209ENST00000457055 DMRT2Q9Y5R5 561 aa17.05■□□□□ 0.32
VPS41-209ENST00000457055 PPP4R3CPQ6ZMV5 832 aa16.9■□□□□ 0.3
VPS41-209ENST00000457055 CNKSR2Q8WXI2 1034 aa16.56■□□□□ 0.24
VPS41-209ENST00000457055 HOXD11P31277 338 aaPredicted RBP16.45■□□□□ 0.22
VPS41-209ENST00000457055 DCAF8L1A6NGE4 600 aa16.39■□□□□ 0.21
VPS41-209ENST00000457055 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
VPS41-209ENST00000457055 NCBP3Q53F19 620 aaKnown RBP16.3■□□□□ 0.2
VPS41-209ENST00000457055 NPM3O75607 178 aaKnown RBP16.05■□□□□ 0.16
VPS41-209ENST00000457055 CACNB1Q02641 598 aaPredicted RBP15.97■□□□□ 0.15
VPS41-209ENST00000457055 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
VPS41-209ENST00000457055 KCNA4P22459 653 aa15.85■□□□□ 0.13
VPS41-209ENST00000457055 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
VPS41-209ENST00000457055 C1QBPQ07021 282 aaKnown RBP15.72■□□□□ 0.11
VPS41-209ENST00000457055 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.72■□□□□ 0.111e-6■■■■□ 19.8
VPS41-209ENST00000457055 U3KPZ7 1027 aaPredicted RBP15.37■□□□□ 0.05
VPS41-209ENST00000457055 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
VPS41-209ENST00000457055 CAPN15O75808 1086 aa15.12■□□□□ 0.01
VPS41-209ENST00000457055 SPINK5Q9NQ38 1064 aaPredicted RBP15.12■□□□□ 0.01
VPS41-209ENST00000457055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15□□□□□ -0.01
VPS41-209ENST00000457055 HNRNPUL2Q1KMD3 747 aaKnown RBP15□□□□□ -0.01
VPS41-209ENST00000457055 SLC4A1APQ9BWU0 796 aaKnown RBP15□□□□□ -0.01
VPS41-209ENST00000457055 APLP2Q06481 763 aa14.99□□□□□ -0.01
VPS41-209ENST00000457055 DSG3P32926 999 aa14.97□□□□□ -0.01
VPS41-209ENST00000457055 SAMD1Q6SPF0 538 aaPredicted RBP14.92□□□□□ -0.02
VPS41-209ENST00000457055 TRHP20396 242 aaPredicted RBP14.9□□□□□ -0.02
VPS41-209ENST00000457055 ZNF219Q9P2Y4 722 aaPredicted RBP14.87□□□□□ -0.03
VPS41-209ENST00000457055 MYCNP04198 464 aaPredicted RBP14.86□□□□□ -0.03
VPS41-209ENST00000457055 ABCB7O75027 752 aa14.77□□□□□ -0.05
VPS41-209ENST00000457055 FOXD4L1Q9NU39 408 aa14.77□□□□□ -0.05
VPS41-209ENST00000457055 ZBTB22O15209 634 aa14.56□□□□□ -0.08
VPS41-209ENST00000457055 POLA2Q14181 598 aa14.5□□□□□ -0.09
VPS41-209ENST00000457055 ATF5Q9Y2D1 282 aaPredicted RBP14.48□□□□□ -0.09
VPS41-209ENST00000457055 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
VPS41-209ENST00000457055 ATXN8OSP0DMR3 200 aa14.28□□□□□ -0.12
VPS41-209ENST00000457055 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
VPS41-209ENST00000457055 POTEHQ6S545 545 aa14.16□□□□□ -0.14
VPS41-209ENST00000457055 OSCARQ8IYS5 282 aa14.06□□□□□ -0.16
VPS41-209ENST00000457055 CSRNP3Q8WYN3 585 aa13.99□□□□□ -0.17
VPS41-209ENST00000457055 AKT1S1Q96B36 256 aa13.99□□□□□ -0.17
VPS41-209ENST00000457055 FBLN2P98095 1184 aa13.94□□□□□ -0.18
VPS41-209ENST00000457055 CHRDL2Q6WN34 429 aa13.93□□□□□ -0.18
VPS41-209ENST00000457055 EHMT2Q96KQ7 1210 aa13.92□□□□□ -0.18
VPS41-209ENST00000457055 REM2Q8IYK8 340 aaPredicted RBP13.85□□□□□ -0.19
VPS41-209ENST00000457055 MKRN4PQ13434 485 aaPredicted RBP13.82□□□□□ -0.2
VPS41-209ENST00000457055 SPDYE2BA6NHP3 402 aa13.8□□□□□ -0.2
VPS41-209ENST00000457055 SPDYE6P0CI01 402 aa13.8□□□□□ -0.2
VPS41-209ENST00000457055 SPDYE2Q495Y8 402 aa13.8□□□□□ -0.2
VPS41-209ENST00000457055 PITPNM1O00562 1244 aa13.71□□□□□ -0.21
VPS41-209ENST00000457055 ZNF692Q9BU19 519 aaPredicted RBP13.66□□□□□ -0.22
VPS41-209ENST00000457055 PIP4P2Q8N4L2 257 aa13.63□□□□□ -0.23
VPS41-209ENST00000457055 SSUH2Q9Y2M2 353 aa13.61□□□□□ -0.23
VPS41-209ENST00000457055 FXR2P51116 673 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS41-209ENST00000457055 SPDYE1Q8NFV5 336 aaPredicted RBP13.53□□□□□ -0.24
VPS41-209ENST00000457055 CLEC11AQ9Y240 323 aa13.52□□□□□ -0.25
VPS41-209ENST00000457055 PABPN1Q86U42 306 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS41-209ENST00000457055 PRKAR2AP13861 404 aaKnown RBP13.36□□□□□ -0.27
VPS41-209ENST00000457055 HAX1O00165 279 aa13.35□□□□□ -0.27
VPS41-209ENST00000457055 SP7Q8TDD2 431 aaPredicted RBP13.33□□□□□ -0.28
VPS41-209ENST00000457055 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
VPS41-209ENST00000457055 SPDYE4A6NLX3 237 aa13.25□□□□□ -0.29
VPS41-209ENST00000457055 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
VPS41-209ENST00000457055 EVX2Q03828 476 aa13.16□□□□□ -0.3
VPS41-209ENST00000457055 C19orf67A6NJJ6 358 aa13.11□□□□□ -0.31
VPS41-209ENST00000457055 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
VPS41-209ENST00000457055 FARP1Q9Y4F1 1045 aaPredicted RBP13.04□□□□□ -0.32
VPS41-209ENST00000457055 CREBZFQ9NS37 354 aa12.98□□□□□ -0.33
VPS41-209ENST00000457055 CD44P16070 742 aaKnown RBP12.95□□□□□ -0.34
VPS41-209ENST00000457055 PROM2Q8N271 834 aa12.92□□□□□ -0.34
VPS41-209ENST00000457055 GABBR2O75899 941 aa12.89□□□□□ -0.35
VPS41-209ENST00000457055 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
VPS41-209ENST00000457055 NPM1P06748 294 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS41-209ENST00000457055 MNX1P50219 401 aaPredicted RBP12.76□□□□□ -0.37
VPS41-209ENST00000457055 ZNF579Q8NAF0 562 aaKnown RBP12.74□□□□□ -0.37
VPS41-209ENST00000457055 PAK3O75914 559 aaPredicted RBP12.73□□□□□ -0.37
VPS41-209ENST00000457055 CLCN6P51797 869 aa12.73□□□□□ -0.37
VPS41-209ENST00000457055 FKBP8Q14318 412 aa12.72□□□□□ -0.37
VPS41-209ENST00000457055 PLEKHG5O94827 1062 aa12.64□□□□□ -0.39
VPS41-209ENST00000457055 MIER1Q8N108 512 aa12.63□□□□□ -0.39
VPS41-209ENST00000457055 PHF12Q96QT6 1004 aa12.61□□□□□ -0.39
VPS41-209ENST00000457055 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
VPS41-209ENST00000457055 DCBLD2Q96PD2 775 aa12.6□□□□□ -0.39
VPS41-209ENST00000457055 GALR2O43603 387 aaPredicted RBP12.58□□□□□ -0.4
VPS41-209ENST00000457055 PLCD3Q8N3E9 789 aa12.57□□□□□ -0.4
VPS41-209ENST00000457055 TSPYL2Q9H2G4 693 aaPredicted RBP12.55□□□□□ -0.4
VPS41-209ENST00000457055 LHX8Q68G74 356 aa12.5□□□□□ -0.41
VPS41-209ENST00000457055 ZBTB47Q9UFB7 747 aaPredicted RBP12.46□□□□□ -0.41
VPS41-209ENST00000457055 CCDC61Q9Y6R9 512 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms