RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 NEDD9Q14511 834 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 LETM2Q2VYF4 491 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 SLC9C1Q4G0N8 1177 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 UTP11Q9Y3A2 253 aaKnown RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 PBRM1Q86U86 1689 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 B4E1Z4 1266 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 PER1O15534 1290 aaPredicted RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 MBD4O95243 580 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 BRD1O95696 1058 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 TNFAIP3P21580 790 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ERCC5P28715 1186 aaPredicted RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 MAGEA1P43355 309 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 HELBQ8NG08 1087 aaPredicted RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 SETDB2Q96T68 719 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 DDX21Q9NR30 783 aaKnown RBP eCLIP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 NIP7Q9Y221 180 aaKnown RBP eCLIP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 FRMD4BQ9Y2L6 1034 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ST5P78524 1137 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 CLUL1Q15846 466 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 CCDC14Q49A88 953 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 FYB2Q5VWT5 728 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ZNF804AQ7Z570 1209 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ZKSCAN3Q9BRR0 538 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 CARD14Q9BXL6 1004 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 NCOA5Q9HCD5 579 aaKnown RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 CPSF2Q9P2I0 782 aaKnown RBP8.7□□□□□ -1.02
NEDD9-204ENST00000448183 ABCA5Q8WWZ7 1642 aa8.7□□□□□ -1.02
NEDD9-204ENST00000448183 KDM5BQ9UGL1 1544 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 IRS4O14654 1257 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 CLNS1AP54105 237 aaKnown RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 CETN3O15182 167 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 ZNF500O60304 480 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 ZNF365Q70YC5 407 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 SND1Q7KZF4 910 aaKnown RBP eCLIP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 RPGRIP1Q96KN7 1286 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 FEZ2Q9UHY8 353 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 MAPK8IP1Q9UQF2 711 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 PTPRKQ15262 1439 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 MRPL12P52815 198 aaKnown RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 TPD52P55327 224 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 RNASE9P60153 205 aaKnown RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 G2E3Q7L622 706 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 VSIG1Q86XK7 387 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 GPATCH8Q9UKJ3 1502 aaKnown RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 F8W031 263 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 EYA2O00167 538 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 BUB1BO60566 1050 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 BRD3Q15059 726 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 ASIC2Q16515 512 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 PNMA8AQ86V59 439 aaPredicted RBP8.69□□□□□ -1.02
NEDD9-204ENST00000448183 ZNF354CQ86Y25 554 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 NFATC2IPQ8NCF5 419 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 WDR66Q8TBY9 1149 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 APPBP2Q92624 585 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 TSKSQ9UJT2 592 aa8.69□□□□□ -1.02
NEDD9-204ENST00000448183 PARP1P09874 1014 aaKnown RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 MTX1Q13505 466 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TSNAXIP1Q2TAA8 658 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TNNI3KQ59H18 835 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 OTUD7BQ6GQQ9 843 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CDC37L1Q7L3B6 337 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TAOK1Q7L7X3 1001 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CADPS2Q86UW7 1296 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 UBL4BQ8N7F7 174 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 KIFAP3Q92845 792 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TM6SF1Q9BZW5 370 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 FPGT-TNNI3KV9GXZ4 949 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TIMM10P62072 90 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 ZSCAN26Q16670 478 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CFAP221Q4G0U5 840 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 ZNF622Q969S3 477 aaKnown RBP eCLIP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 EYA1Q99502 592 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 PPP1R12CQ9BZL4 782 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TAB2Q9NYJ8 693 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CEP104O60308 925 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 PLS1Q14651 629 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 POSTNQ15063 836 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TTC38Q5R3I4 469 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 PIK3AP1Q6ZUJ8 805 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CCDC84Q86UT8 332 aaPredicted RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 DZIP3Q86Y13 1208 aaKnown RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 SMC1BQ8NDV3 1235 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 FAM227BQ96M60 508 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 SLF1Q9BQI6 1058 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 DBNDD2Q9BQY9 259 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 XPO4Q9C0E2 1151 aaKnown RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 VCX3BQ9H321 246 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 RABEP2Q9H5N1 569 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 NPATQ14207 1427 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 PPFIA4O75335 1185 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 GBP1P32455 592 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CEBPAP49715 358 aaPredicted RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 MTMR3Q13615 1198 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 UAP1Q16222 522 aaPredicted RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 CEP85LQ5SZL2 805 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 NGLY1Q96IV0 654 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 TRIM31Q9BZY9 425 aa8.68□□□□□ -1.02
NEDD9-204ENST00000448183 V9GY48 417 aaPredicted RBP8.68□□□□□ -1.02
NEDD9-204ENST00000448183 FANCAO15360 1455 aa8.67□□□□□ -1.02
NEDD9-204ENST00000448183 MYCNP04198 464 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms