RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 GDPD2Q9HCC8 539 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 IQSEC3Q9UPP2 1182 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 NIP7Q9Y221 180 aaKnown RBP eCLIP3.17□□□□□ -1.9
LIG4-203ENST00000442234 VPS9D1Q9Y2B5 631 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PZPP20742 1482 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PTPRCP08575 1304 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SPHKAPQ2M3C7 1700 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ROBO1Q9Y6N7 1651 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 MBD5Q9P267 1494 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 RBM47A0AV96 593 aaKnown RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 ERLIN1O75477 346 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PYGLP06737 847 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 MCM2P49736 904 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 VEGFBP49765 207 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PRPF4BQ13523 1007 aaKnown RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 C6orf132Q5T0Z8 1188 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 DDX46Q7L014 1031 aaKnown RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 CEP112Q8N8E3 955 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 B4GALNT2Q8NHY0 566 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 STAG1Q8WVM7 1258 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PIGBQ92521 554 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SMARCC1Q92922 1105 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 TEX13AQ9BXU3 409 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 SPG7Q9UQ90 795 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 FRMD4BQ9Y2L6 1034 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 USP6P35125 1406 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 APC2O95996 2303 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 URB1O60287 2271 aaKnown RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 PNPLA7Q6ZV29 1317 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 TTC21BQ7Z4L5 1316 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 BCL9LQ86UU0 1499 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 HMMRO75330 724 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SERPINB2P05120 415 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SSBP05455 408 aaKnown RBP eCLIP3.17□□□□□ -1.9
LIG4-203ENST00000442234 CCDC175P0C221 793 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 MAGEA8P43361 318 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 PRSS12P56730 875 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ACBD5Q5T8D3 534 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 RNF187Q5TA31 235 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 ZNF280DQ6N043 979 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 C16orf87Q6PH81 154 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 USP48Q86UV5 1035 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 AMIGO3Q86WK7 504 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 KIRREL3Q8IZU9 778 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 CNTROBQ8N137 903 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 CNBD1Q8NA66 436 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ZNF483Q8TF39 744 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 FAXDC2Q96IV6 333 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 FMNL2Q96PY5 1086 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ADAM33Q9BZ11 813 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 TAOK3Q9H2K8 898 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ZSCAN16Q9H4T2 348 aaPredicted RBP3.17□□□□□ -1.9
LIG4-203ENST00000442234 DBNDD1Q9H9R9 158 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ATG3Q9NT62 314 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 ANKIB1Q9P2G1 1089 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 RABGEF1Q9UJ41 708 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 FHOD1Q9Y613 1164 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 MST1RQ04912 1400 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SPATA31E1Q6ZUB1 1445 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 DIP2AQ14689 1571 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 SAMD9LQ8IVG5 1584 aa3.17□□□□□ -1.9
LIG4-203ENST00000442234 DEPDC5O75140 1603 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 DNMT1P26358 1616 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 BECN2A8MW95 431 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 SRGAP3O43295 1099 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 TBC1D8O95759 1140 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 CAVIN2O95810 425 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 CACNA1BQ00975 2339 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 TBC1D8BQ0IIM8 1120 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 AKNAD1Q5T1N1 836 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 MOB2Q70IA6 237 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 WHAMMQ8TF30 809 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 YIPF3Q9GZM5 350 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 INCENPQ9NQS7 918 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 NPDC1Q9NQX5 325 aaPredicted RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 DNAI1Q9UI46 699 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.16□□□□□ -1.9
LIG4-203ENST00000442234 CACNA1AO00555 2505 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 RPRD2Q5VT52 1461 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 ATP8B1O43520 1251 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 PPFIA4O75335 1185 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 SKILP12757 684 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 PECAM1P16284 738 aaPredicted RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 MECOMQ03112 1051 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 MYBPC2Q14324 1141 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 PDE3AQ14432 1141 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 E2F5Q15329 346 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 TSGA10IPQ3SY00 556 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 NLGN1Q8N2Q7 840 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 C3orf20Q8ND61 904 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 NOC3LQ8WTT2 800 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 C17orf50Q8WW18 174 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 CAPNS2Q96L46 248 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 NAT10Q9H0A0 1025 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 ZNHIT6Q9NWK9 470 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 SPTAN1Q13813 2472 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 MKI67P46013 3256 aaKnown RBP3.16□□□□□ -1.9
LIG4-203ENST00000442234 ANKRD36BQ8N2N9 1353 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 ABCA6Q8N139 1617 aa3.16□□□□□ -1.9
LIG4-203ENST00000442234 ABCA3Q99758 1704 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms