RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 CTAGE5O15320 804 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 CALM1P0DP23 149 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 CALM2P0DP24 149 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 CALM3P0DP25 149 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 PDE6BP35913 854 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 HSP90AA4PQ58FG1 418 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 AKNAD1Q5T1N1 836 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 CXorf38Q8TB03 319 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 CHAMP1Q96JM3 812 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 TSPAN18Q96SJ8 248 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 GPCPD1Q9NPB8 672 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 MAP2P11137 1827 aaKnown RBP9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 RTL9Q8NET4 1388 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 TRIM75PA6NK02 468 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 TFAP4Q01664 338 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 FLAD1Q8NFF5 587 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 KCNG4Q8TDN1 519 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 MAP4K1Q92918 833 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 GPR101Q96P66 508 aaPredicted RBP9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 TM6SF1Q9BZW5 370 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 GPR108Q9NPR9 543 aa9.28□□□□□ -0.92
TMEM39A-202ENST00000438581 PKP1Q13835 747 aa9.27□□□□□ -0.92
TMEM39A-202ENST00000438581 CMTR1Q8N1G2 835 aaKnown RBP9.27□□□□□ -0.92
TMEM39A-202ENST00000438581 MRPS27Q92552 414 aaKnown RBP9.27□□□□□ -0.92
TMEM39A-202ENST00000438581 FRMD4BQ9Y2L6 1034 aa9.27□□□□□ -0.92
TMEM39A-202ENST00000438581 ESPNB1AK53 854 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 CYP21A2P08686 494 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 TPCN1Q9ULQ1 816 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 TNNI2P48788 182 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 ZYXQ15942 572 aaKnown RBP9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 CCDC148Q8NFR7 591 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 SMARCE1Q969G3 411 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 OSBP2Q969R2 916 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 BCS1LQ9Y276 419 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 JCADQ9P266 1359 aa9.27□□□□□ -0.93
TMEM39A-202ENST00000438581 ADD1P35611 737 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 SARNPP82979 210 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 PPARAQ07869 468 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 MTX1Q13505 466 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ZMYM1Q5SVZ6 1142 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ARHGEF1Q92888 912 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 CLEC11AQ9Y240 323 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 MAST3O60307 1309 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ARHGEF28Q8N1W1 1705 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 MMP10P09238 476 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ATP2B4P23634 1241 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 TBC1D9BQ66K14 1250 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ISCA1Q9BUE6 129 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 TPD52L2O43399 206 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 EIF5P55010 431 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 GJC2Q5T442 439 aaPredicted RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 CLEC4GQ6UXB4 293 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 CDC37L1Q7L3B6 337 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 TBC1D22AQ8WUA7 517 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 RRP36Q96EU6 259 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 PUS7LQ9H0K6 701 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 USP40Q9NVE5 1235 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 A0A1B0GVL5 298 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 CBFA2T2O43439 604 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 PRKAB2O43741 272 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ECM2O94769 699 aaPredicted RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 MCM7P33993 719 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 DYNLL1P63167 89 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 TNIP1Q15025 636 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 CALML4Q96GE6 196 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ZSWIM6Q9HCJ5 1215 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 ZNHIT6Q9NWK9 470 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 NARFQ9UHQ1 456 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 SAMM50Q9Y512 469 aa9.26□□□□□ -0.93
TMEM39A-202ENST00000438581 SPATA31A1Q5TZJ5 1347 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 POLR1AO95602 1720 aaPredicted RBP9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 PARP1P09874 1014 aaKnown RBP9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 RASGRF1Q13972 1273 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 CT47A1Q5JQC4 288 aaPredicted RBP9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 CPLX3Q8WVH0 158 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 CELF1Q92879 486 aaKnown RBP9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 MYO5BQ9ULV0 1848 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 M0R2C6 588 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 UBE3CQ15386 1083 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 LRSAM1Q6UWE0 723 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 DHX58Q96C10 678 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 PLIN2Q99541 437 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 C6orf50Q9HD87 102 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 KCNJ14Q9UNX9 436 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 COL15A1P39059 1388 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 CALML3P27482 149 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 KRT2P35908 639 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 PRKG1Q13976 671 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 ZNF174Q15697 407 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 STX1AQ16623 288 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 DIS3L2Q8IYB7 885 aaKnown RBP9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 DNAJC25Q9H1X3 360 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 XDHP47989 1333 aa9.25□□□□□ -0.93
TMEM39A-202ENST00000438581 ADCY5O95622 1261 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 ANO6Q4KMQ2 910 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 TRAIPQ9BWF2 469 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 DEF6Q9H4E7 631 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 DBNDD1Q9H9R9 158 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 MST1RQ04912 1400 aa9.24□□□□□ -0.93
TMEM39A-202ENST00000438581 MCAMP43121 646 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms