RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 MYH3P11055 1940 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 ZNF532Q9HCE3 1301 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 FGFR2P21802 821 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 CDC27P30260 824 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 ERFEQ4G0M1 354 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 HPSEQ9Y251 543 aa16.53■□□□□ 0.24
LIG1-202ENST00000427526 MYO5AQ9Y4I1 1855 aaKnown RBP16.53■□□□□ 0.24
LIG1-202ENST00000427526 RREB1Q92766 1687 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 PTPAQ15257 358 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 PTPN14Q15678 1187 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 NTRK3Q16288 839 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 MEX3CQ5U5Q3 659 aaKnown RBP16.52■□□□□ 0.24
LIG1-202ENST00000427526 CLEC4GQ6UXB4 293 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 C3orf67Q6ZVT6 689 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 VPS37DQ86XT2 251 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 LPIN2Q92539 896 aa16.52■□□□□ 0.24
LIG1-202ENST00000427526 XPO4Q9C0E2 1151 aaKnown RBP16.52■□□□□ 0.24
LIG1-202ENST00000427526 PPP6R2O75170 966 aa16.52■□□□□ 0.23
LIG1-202ENST00000427526 CDKL5O76039 1030 aa16.52■□□□□ 0.23
LIG1-202ENST00000427526 PDE6AP16499 860 aa16.52■□□□□ 0.23
LIG1-202ENST00000427526 ZRSR1Q15695 479 aaKnown RBP16.52■□□□□ 0.23
LIG1-202ENST00000427526 KRT40Q6A162 431 aa16.52■□□□□ 0.23
LIG1-202ENST00000427526 TMEM87BQ96K49 555 aa16.52■□□□□ 0.23
LIG1-202ENST00000427526 STRBPQ96SI9 672 aaKnown RBP16.52■□□□□ 0.23
LIG1-202ENST00000427526 MAP3K14Q99558 947 aa16.52■□□□□ 0.23
LIG1-202ENST00000427526 FAM237AA0A1B0GTK4 181 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 BIN1O00499 593 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 IDH1O75874 414 aaKnown RBP16.51■□□□□ 0.23
LIG1-202ENST00000427526 MARCKSP29966 332 aaPredicted RBP16.51■□□□□ 0.23
LIG1-202ENST00000427526 FAM217BQ9NTX9 383 aaPredicted RBP16.51■□□□□ 0.23
LIG1-202ENST00000427526 SRP68Q9UHB9 627 aaKnown RBP16.51■□□□□ 0.23
LIG1-202ENST00000427526 TUBE1Q9UJT0 475 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 B4E1Z4 1266 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 ALX1Q15699 326 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 TBC1D9BQ66K14 1250 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 SGMS1Q86VZ5 419 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 GJD4Q96KN9 370 aaPredicted RBP16.51■□□□□ 0.23
LIG1-202ENST00000427526 IFNKQ9P0W0 207 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 WWC3Q9ULE0 1092 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 APPP05067 770 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 RXRAP19793 462 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 U2AF2P26368 475 aaKnown RBP eCLIP16.51■□□□□ 0.23
LIG1-202ENST00000427526 HSPA1LP34931 641 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 SHC4Q6S5L8 630 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 HSD3B7Q9H2F3 369 aa16.51■□□□□ 0.23
LIG1-202ENST00000427526 CNTNAP4Q9C0A0 1308 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 IKBKBO14920 756 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 IGHMBP2P38935 993 aaKnown RBP16.5■□□□□ 0.23
LIG1-202ENST00000427526 CBX1P83916 185 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 NAA30Q147X3 362 aaPredicted RBP16.5■□□□□ 0.23
LIG1-202ENST00000427526 ARMCX5Q6P1M9 558 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 AMIGO3Q86WK7 504 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 PHKBQ93100 1093 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 LY9Q9HBG7 655 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 ZNF592Q92610 1267 aa16.5■□□□□ 0.23
LIG1-202ENST00000427526 TRMT1Q9NXH9 659 aaKnown RBP16.5■□□□□ 0.23
LIG1-202ENST00000427526 CCNL1Q9UK58 526 aaPredicted RBP16.5■□□□□ 0.23
LIG1-202ENST00000427526 GNPATO15228 680 aa16.49■□□□□ 0.23
LIG1-202ENST00000427526 RANBP6O60518 1105 aaKnown RBP16.49■□□□□ 0.23
LIG1-202ENST00000427526 UQCRFS1P1P0C7P4 283 aa16.49■□□□□ 0.23
LIG1-202ENST00000427526 SYKP43405 635 aa16.49■□□□□ 0.23
LIG1-202ENST00000427526 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.49■□□□□ 0.23
LIG1-202ENST00000427526 CICQ96RK0 1608 aaPredicted RBP16.49■□□□□ 0.23
LIG1-202ENST00000427526 ZBTB43O43298 467 aa16.49■□□□□ 0.23
LIG1-202ENST00000427526 SLC5A1P13866 664 aa16.49■□□□□ 0.23
LIG1-202ENST00000427526 ZSCAN20P17040 1043 aaPredicted RBP16.49■□□□□ 0.23
LIG1-202ENST00000427526 CERKQ8TCT0 537 aa16.49■□□□□ 0.23
LIG1-202ENST00000427526 SMC2O95347 1197 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 LIFRP42702 1097 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 E4F1Q66K89 784 aaPredicted RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 CPLX2Q6PUV4 134 aaKnown RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 PAXIP1Q6ZW49 1069 aaPredicted RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 MICU3Q86XE3 530 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 INCENPQ9NQS7 918 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 COL5A3P25940 1745 aaPredicted RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 AFF2P51816 1311 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 WTIPA6NIX2 430 aaPredicted RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 PATL2C9JE40 543 aaKnown RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 RPS6KA4O75676 772 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 CHRNDQ07001 517 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 RESP18Q5W5W9 173 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 CCDC150Q8NCX0 1101 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 ECM29Q5VYK3 1845 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 IARSP41252 1262 aaKnown RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 KCNJ6P48051 423 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 BCAMP50895 628 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 TPM4P67936 248 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 RASGRF1Q13972 1273 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 TMC6Q7Z403 805 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 CCDC24Q8N4L8 307 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 JMYQ8N9B5 988 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 AIDAQ96BJ3 306 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 FEZ1Q99689 392 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIG1-202ENST00000427526 EPB41L4AQ9HCS5 686 aaPredicted RBP16.48■□□□□ 0.23
LIG1-202ENST00000427526 ZSWIM5Q9P217 1185 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 TACC3Q9Y6A5 838 aa16.48■□□□□ 0.23
LIG1-202ENST00000427526 LRP5O75197 1615 aa16.47■□□□□ 0.23
LIG1-202ENST00000427526 COL4A1P02462 1669 aa16.47■□□□□ 0.23
LIG1-202ENST00000427526 RC3H1Q5TC82 1133 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms