RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PIH1D3Q9NQM4 214 aaKnown RBP12.41□□□□□ -0.42
CUX1-205ENST00000425244 SPTLC3Q9NUV7 552 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 DYNC1I1O14576 645 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 DHX16O60231 1041 aaKnown RBP12.41□□□□□ -0.42
CUX1-205ENST00000425244 RXRAP19793 462 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 GRAPQ13588 217 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 GRAPLQ8TC17 118 aaPredicted RBP12.41□□□□□ -0.42
CUX1-205ENST00000425244 CHMP4CQ96CF2 233 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 A0A1B0GVL5 298 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 TULP1O00294 542 aaPredicted RBP12.41□□□□□ -0.42
CUX1-205ENST00000425244 FAM160A1Q05DH4 1040 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 SNW1Q13573 536 aaKnown RBP12.41□□□□□ -0.42
CUX1-205ENST00000425244 RASGRF1Q13972 1273 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 STX1AQ16623 288 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 ZNF219Q9P2Y4 722 aaPredicted RBP12.41□□□□□ -0.42
CUX1-205ENST00000425244 WWC3Q9ULE0 1092 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 PCDHA7Q9UN72 937 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 HPS5Q9UPZ3 1129 aa12.41□□□□□ -0.42
CUX1-205ENST00000425244 BECN2A8MW95 431 aa12.4□□□□□ -0.42
CUX1-205ENST00000425244 ADD2P35612 726 aa12.4□□□□□ -0.42
CUX1-205ENST00000425244 OLFM4Q6UX06 510 aa12.4□□□□□ -0.42
CUX1-205ENST00000425244 ZNF622Q969S3 477 aaKnown RBP eCLIP12.4□□□□□ -0.421e-7■■□□□ 13.1
CUX1-205ENST00000425244 SDF4Q9BRK5 362 aa12.4□□□□□ -0.42
CUX1-205ENST00000425244 CLIP2Q9UDT6 1046 aa12.4□□□□□ -0.42
CUX1-205ENST00000425244 CLIC4Q9Y696 253 aa12.4□□□□□ -0.42
CUX1-205ENST00000425244 CTAGE5O15320 804 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 CAVIN4Q5BKX8 364 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 ZSCAN25Q6NSZ9 544 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 TBC1D10CQ8IV04 446 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 CCDC144CPQ8IYA2 1237 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 SPATA5Q8NB90 893 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 RBM17Q96I25 401 aaKnown RBP12.4□□□□□ -0.43
CUX1-205ENST00000425244 ABCF2Q9UG63 623 aa12.4□□□□□ -0.43
CUX1-205ENST00000425244 ZNF532Q9HCE3 1301 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 EVCP57679 992 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 ATL3Q6DD88 541 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 TXNRD3Q86VQ6 643 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 PLA2G4DQ86XP0 818 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 MYRIPQ8NFW9 859 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 NKX2-3Q8TAU0 364 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 MRPS27Q92552 414 aaKnown RBP12.39□□□□□ -0.43
CUX1-205ENST00000425244 LRP5O75197 1615 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 NBPF3Q9H094 633 aa12.39□□□□□ -0.43
CUX1-205ENST00000425244 PDE6AP16499 860 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 TTF1Q15361 905 aaPredicted RBP12.38□□□□□ -0.43
CUX1-205ENST00000425244 CRY2Q49AN0 593 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 SYNE3Q6ZMZ3 975 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 MICU3Q86XE3 530 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 ENGASEQ8NFI3 743 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 FBXO18Q8NFZ0 1043 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 PRIMPOLQ96LW4 560 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 AIFM3Q96NN9 605 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 BRIP1Q9BX63 1249 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 RTEL1Q9NZ71 1219 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 ZNF804BA4D1E1 1349 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 B4E1Z4 1266 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 KIF28PB7ZC32 967 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 CAVIN2O95810 425 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 UQCRFS1P1P0C7P4 283 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 NDUFA8P51970 172 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 CHAF1AQ13111 956 aaPredicted RBP12.38□□□□□ -0.43
CUX1-205ENST00000425244 UBE4AQ14139 1066 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 IQCB1Q15051 598 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 NFXL1Q6ZNB6 911 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 CYB5R4Q7L1T6 521 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 FBXL16Q8N461 479 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 AIDAQ96BJ3 306 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 INCENPQ9NQS7 918 aa12.38□□□□□ -0.43
CUX1-205ENST00000425244 ZBTB7AO95365 584 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 ARID4AP29374 1257 aaPredicted RBP12.37□□□□□ -0.43
CUX1-205ENST00000425244 CHRNA5P30532 468 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 METAP2P50579 478 aaKnown RBP eCLIP12.37□□□□□ -0.433e-6■■■■□ 24.7
CUX1-205ENST00000425244 ZRSR1Q15695 479 aaKnown RBP12.37□□□□□ -0.43
CUX1-205ENST00000425244 LINC00301Q8NCQ3 95 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 FAM84BQ96KN1 310 aaPredicted RBP12.37□□□□□ -0.43
CUX1-205ENST00000425244 ANKRD2Q9GZV1 360 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 SENP2Q9HC62 589 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 ANO10Q9NW15 660 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 ANGEL1Q9UNK9 670 aaKnown RBP12.37□□□□□ -0.43
CUX1-205ENST00000425244 SPTLC2O15270 562 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 GNL2Q13823 731 aaKnown RBP12.37□□□□□ -0.43
CUX1-205ENST00000425244 CCDC144BQ3MJ40 725 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 MYSM1Q5VVJ2 828 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 CEP57L1Q8IYX8 460 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 STK11IPQ8N1F8 1099 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 PHKBQ93100 1093 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 MYL10Q9BUA6 226 aa12.37□□□□□ -0.43
CUX1-205ENST00000425244 MYO5AQ9Y4I1 1855 aaKnown RBP12.37□□□□□ -0.43
CUX1-205ENST00000425244 C6orf229H3BNL8 230 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 UFL1O94874 794 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 SRGNP10124 158 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 GPSM2P81274 684 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 ADALQ6DHV7 355 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 FMR1NBQ8N0W7 255 aaPredicted RBP12.36□□□□□ -0.43
CUX1-205ENST00000425244 AOPEPQ8N6M6 819 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 KCNG4Q8TDN1 519 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 LRP2BPQ9P2M1 347 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 PPP1R1BQ9UD71 204 aaPredicted RBP12.36□□□□□ -0.43
CUX1-205ENST00000425244 BIN1O00499 593 aa12.36□□□□□ -0.43
CUX1-205ENST00000425244 MARCKSP29966 332 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms