RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TFAP4Q01664 338 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 AOC3Q16853 763 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 ABCB5Q2M3G0 1257 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 CHST3Q7LGC8 479 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 APBB1IPQ7Z5R6 666 aaPredicted RBP11.63□□□□□ -0.55
USP54-201ENST00000339859 APOBEC3FQ8IUX4 373 aaKnown RBP11.63□□□□□ -0.55
USP54-201ENST00000339859 BICD1Q96G01 975 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 TRAK2O60296 914 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 ADORA1P30542 326 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 PPFIBP1Q86W92 1011 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 CNNM3Q8NE01 707 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 CSRNP1Q96S65 589 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 MTFR1LQ9H019 292 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 SKAP1Q86WV1 359 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 CCDC17Q96LX7 622 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 CLIP2Q9UDT6 1046 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 CTAGE5O15320 804 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 FAM227BQ96M60 508 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 TBC1D32Q96NH3 1257 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 TRIM5Q9C035 493 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 KNDC1Q76NI1 1749 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 CCNA1P78396 465 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 AKNAD1Q5T1N1 836 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 IFNL3Q8IZI9 196 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 SYCP3Q8IZU3 236 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 EAF2Q96CJ1 260 aaPredicted RBP11.62□□□□□ -0.55
USP54-201ENST00000339859 ANGEL1Q9UNK9 670 aaKnown RBP11.62□□□□□ -0.55
USP54-201ENST00000339859 IFT172Q9UG01 1749 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 CAMTA2O94983 1202 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 DEXIO95424 95 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 NECAB1Q8N987 351 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 DKC1O60832 514 aaKnown RBP eCLIP11.62□□□□□ -0.55
USP54-201ENST00000339859 CCDC174Q6PII3 467 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 TMX3Q96JJ7 454 aa11.62□□□□□ -0.55
USP54-201ENST00000339859 ZNF277Q9NRM2 450 aaPredicted RBP11.62□□□□□ -0.55
USP54-201ENST00000339859 EIF5P55010 431 aaKnown RBP11.61□□□□□ -0.55
USP54-201ENST00000339859 ICA1Q05084 483 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 KIFC2Q96AC6 838 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 SPC25Q9HBM1 224 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 USP17L12C9JPN9 530 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 USP17L21D6R901 530 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 MINPP1Q9UNW1 487 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 ZNF521Q96K83 1311 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 EPB41L2O43491 1005 aaKnown RBP11.61□□□□□ -0.55
USP54-201ENST00000339859 PRDM1O75626 825 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 CFAP100Q494V2 611 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 PAGR1Q9BTK6 254 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 RMND1Q9NWS8 449 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 NDUFB9Q9Y6M9 179 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 ADGRB2O60241 1585 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 GPSM2P81274 684 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 MAP3K11Q16584 847 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 MCTP2Q6DN12 878 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 OTUD7AQ8TE49 926 aaPredicted RBP11.61□□□□□ -0.55
USP54-201ENST00000339859 TCEANC2Q96MN5 208 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.61□□□□□ -0.552e-6■■■■■ 149.1
USP54-201ENST00000339859 SGSM2O43147 1006 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 CCP110O43303 1012 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 ADCY7P51828 1080 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 ITPK1Q13572 414 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 NOD1Q9Y239 953 aa11.61□□□□□ -0.55
USP54-201ENST00000339859 MEGF6O75095 1541 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 FKBP15Q5T1M5 1219 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.6□□□□□ -0.55
USP54-201ENST00000339859 A0A0G2JLW4 131 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 CETN1Q12798 172 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 PRR5LQ6MZQ0 368 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 DEF6Q9H4E7 631 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 USP42Q9H9J4 1324 aaKnown RBP11.6□□□□□ -0.55
USP54-201ENST00000339859 BACH1O14867 736 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 CHRNA5P30532 468 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 TRMT1LQ7Z2T5 733 aaKnown RBP11.6□□□□□ -0.55
USP54-201ENST00000339859 DEFB132Q7Z7B7 95 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 DRC1Q96MC2 740 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 TRIM75PA6NK02 468 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 PTPN12Q05209 780 aaKnown RBP11.6□□□□□ -0.55
USP54-201ENST00000339859 GSE1Q14687 1217 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 KRT79Q5XKE5 535 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 USP37Q86T82 979 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 MCF2L2Q86YR7 1114 aa11.6□□□□□ -0.55
USP54-201ENST00000339859 NOP56O00567 594 aaKnown RBP11.59□□□□□ -0.55
USP54-201ENST00000339859 DEKP35659 375 aaKnown RBP11.59□□□□□ -0.55
USP54-201ENST00000339859 STAT6P42226 847 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 FSIP1Q8NA03 581 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 KCNG4Q8TDN1 519 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 ZSCAN10Q96SZ4 725 aaPredicted RBP11.59□□□□□ -0.55
USP54-201ENST00000339859 EXOC1Q9NV70 894 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 FAM47AQ5JRC9 791 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 SLC10A4Q96EP9 437 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 AK2P54819 239 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 CCDC173Q0VFZ6 552 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 TRIM28Q13263 835 aaKnown RBP11.59□□□□□ -0.55
USP54-201ENST00000339859 CPXCR1Q8N123 301 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 ZNF397Q8NF99 534 aaPredicted RBP11.59□□□□□ -0.55
USP54-201ENST00000339859 FMN2Q9NZ56 1722 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 NFKBIBQ15653 356 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 PAF1Q8N7H5 531 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 PLA2G12BQ9BX93 195 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 USP26Q9BXU7 913 aa11.59□□□□□ -0.55
USP54-201ENST00000339859 CRKP46108 304 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms