RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 KIAA0825Q8IV33 1275 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 ZNF654Q8IZM8 581 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 FANCBQ8NB91 859 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 RIPOR2Q9Y4F9 1068 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 RGS12O14924 1447 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 NEMFO60524 1076 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 DKC1O60832 514 aaKnown RBP eCLIP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 SEC24BO95487 1268 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 IFNAR1P17181 557 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 PDIA6Q15084 440 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 PPP4R3AQ6IN85 833 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 PPFIBP1Q86W92 1011 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 USP40Q9NVE5 1235 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 AATFQ9NY61 560 aaKnown RBP eCLIP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 FOSP01100 380 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 APOBRQ0VD83 1088 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 PI4K2BQ8TCG2 481 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 VAT1LQ9HCJ6 419 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 TNKSO95271 1327 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 PPEF1O14829 653 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 GUCY1B3Q02153 619 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 UVSSAQ2YD98 709 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 MAPKAPK5Q8IW41 473 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 FAM200AQ8TCP9 573 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 STRBPQ96SI9 672 aaKnown RBP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 TAOK3Q9H2K8 898 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 SWAP70Q9UH65 585 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 hCG_1984214I3L0E3 225 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 TOP1P11387 765 aaKnown RBP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 SFPQP23246 707 aaKnown RBP eCLIP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 ZNF713Q8N859 430 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 RNF26Q9BY78 433 aaPredicted RBP7.85□□□□□ -1.15
SF3B1-201ENST00000335508 ZHX3Q9H4I2 956 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 CD209Q9NNX6 404 aa7.85□□□□□ -1.15
SF3B1-201ENST00000335508 IQGAP1P46940 1657 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PXDNLA1KZ92 1463 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PFKFB2O60825 505 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 BRD1O95696 1058 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 CUL4AQ13619 759 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 RBM26Q5T8P6 1007 aaKnown RBP7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PNMA1Q8ND90 353 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 CELF1Q92879 486 aaKnown RBP7.84□□□□□ -1.15
SF3B1-201ENST00000335508 GTF3C6Q969F1 213 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 SUPT20HL1Q3ZLR7 823 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PIBF1Q8WXW3 757 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PICK1Q9NRD5 415 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 NONOQ15233 471 aaKnown RBP eCLIP7.84□□□□□ -1.15
SF3B1-201ENST00000335508 KRI1Q8N9T8 703 aaKnown RBP7.84□□□□□ -1.15
SF3B1-201ENST00000335508 GRPEL1Q9HAV7 217 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 SPON1Q9HCB6 807 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 STK24Q9Y6E0 443 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 WDR19Q8NEZ3 1342 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 MMP14P50281 582 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PABPC4Q13310 644 aaKnown RBP eCLIP7.84□□□□□ -1.151e-6■■□□□ 14.5
SF3B1-201ENST00000335508 PDILTQ8N807 584 aa7.84□□□□□ -1.15
SF3B1-201ENST00000335508 LSG1Q9H089 658 aaKnown RBP7.84□□□□□ -1.15
SF3B1-201ENST00000335508 RIMS1Q86UR5 1692 aaKnown RBP7.84□□□□□ -1.15
SF3B1-201ENST00000335508 PSMA7O14818 248 aa7.84□□□□□ -1.16
SF3B1-201ENST00000335508 TSGA10IPQ3SY00 556 aa7.84□□□□□ -1.16
SF3B1-201ENST00000335508 DALRD3Q5D0E6 543 aaKnown RBP7.84□□□□□ -1.16
SF3B1-201ENST00000335508 PRR5LQ6MZQ0 368 aa7.84□□□□□ -1.16
SF3B1-201ENST00000335508 FERMT2Q96AC1 680 aa7.84□□□□□ -1.16
SF3B1-201ENST00000335508 V9GY48 417 aaPredicted RBP7.84□□□□□ -1.16
SF3B1-201ENST00000335508 NRKQ7Z2Y5 1582 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 CEP290O15078 2479 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 BCL9O00512 1426 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 TRAPPC10P48553 1259 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 APOA5Q6Q788 366 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 RASEFQ8IZ41 740 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 REXO1Q8N1G1 1221 aaKnown RBP7.83□□□□□ -1.16
SF3B1-201ENST00000335508 QRICH2Q9H0J4 1663 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 PLCD1P51178 756 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 NECTIN1Q15223 517 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 KRT40Q6A162 431 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 CIAPIN1Q6FI81 312 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 SULF1Q8IWU6 871 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 DDAH1O94760 285 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 ADORA1P30542 326 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 KCNQ4P56696 695 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 MYSM1Q5VVJ2 828 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 CCDC129Q6ZRS4 1044 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 CLEC11AQ9Y240 323 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 COL5A2P05997 1499 aaPredicted RBP7.83□□□□□ -1.16
SF3B1-201ENST00000335508 NTSR2O95665 410 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 CFAP100Q494V2 611 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 OSBP2Q969R2 916 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 ASNSP08243 561 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 HDLBPQ00341 1268 aaKnown RBP7.83□□□□□ -1.16
SF3B1-201ENST00000335508 FAM160A1Q05DH4 1040 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 ITPK1Q13572 414 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 SLC15A2Q16348 729 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 VPS36Q86VN1 386 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 DNAI2Q9GZS0 605 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 DACT1Q9NYF0 836 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 PI4KBQ9UBF8 816 aa7.83□□□□□ -1.16
SF3B1-201ENST00000335508 BTDP43251 543 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 HEATR3Q7Z4Q2 680 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 TSG101Q99816 390 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 AS3MTQ9HBK9 375 aa7.82□□□□□ -1.16
SF3B1-201ENST00000335508 ATP6V0A2Q9Y487 856 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms