RNA–Protein interactions for RNA: ENST00000298173.7

GTF2A1-201, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 2

Gene GTF2A1, Length 1,677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-201ENST00000298173 ARPP21Q9UBL0 812 aaPredicted RBP29.2■■■□□ 2.26
GTF2A1-201ENST00000298173 PCDHAC2Q9Y5I4 1007 aa29.2■■■□□ 2.26
GTF2A1-201ENST00000298173 MINDY4BA8MYZ0 360 aa29.19■■■□□ 2.26
GTF2A1-201ENST00000298173 LMNB1P20700 586 aa29.19■■■□□ 2.26
GTF2A1-201ENST00000298173 AK2P54819 239 aa29.19■■■□□ 2.26
GTF2A1-201ENST00000298173 AKNAD1Q5T1N1 836 aa29.19■■■□□ 2.26
GTF2A1-201ENST00000298173 NCOA7Q8NI08 942 aa29.19■■■□□ 2.26
GTF2A1-201ENST00000298173 USP40Q9NVE5 1235 aa29.19■■■□□ 2.26
GTF2A1-201ENST00000298173 SMIM22K7EJ46 135 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 WDHD1O75717 1129 aaPredicted RBP29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 FGRP09769 529 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 MB21D2Q8IYB1 491 aaPredicted RBP29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 MCM9Q9NXL9 1143 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 NAV1Q8NEY1 1877 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 LAMB1P07942 1786 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 SRCAPQ6ZRS2 3230 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 CYP2D7A0A087X1C5 515 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 MAPKAPK5Q8IW41 473 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 INCENPQ9NQS7 918 aa29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 DAXXQ9UER7 740 aaPredicted RBP29.18■■■□□ 2.26
GTF2A1-201ENST00000298173 DDX60LQ5H9U9 1706 aaKnown RBP29.17■■■□□ 2.26
GTF2A1-201ENST00000298173 USP17L8P0C7I0 530 aa29.17■■■□□ 2.26
GTF2A1-201ENST00000298173 CFAP100Q494V2 611 aa29.17■■■□□ 2.26
GTF2A1-201ENST00000298173 C12orf60Q5U649 245 aa29.17■■■□□ 2.26
GTF2A1-201ENST00000298173 NKX2-3Q8TAU0 364 aa29.17■■■□□ 2.26
GTF2A1-201ENST00000298173 FLT1P17948 1338 aa29.17■■■□□ 2.26
GTF2A1-201ENST00000298173 EIF6P56537 245 aaKnown RBP29.16■■■□□ 2.26
GTF2A1-201ENST00000298173 MFSD6Q6ZSS7 791 aa29.16■■■□□ 2.26
GTF2A1-201ENST00000298173 TCEANC2Q96MN5 208 aa29.16■■■□□ 2.26
GTF2A1-201ENST00000298173 HDAC9Q9UKV0 1011 aa29.16■■■□□ 2.26
GTF2A1-201ENST00000298173 MYH1P12882 1939 aa29.16■■■□□ 2.26
GTF2A1-201ENST00000298173 MMP14P50281 582 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 RBM5P52756 815 aaKnown RBP eCLIP29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 FBXL16Q8N461 479 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 OGFOD1Q8N543 542 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 PRMT6Q96LA8 375 aaPredicted RBP29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 AGXT2Q9BYV1 514 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 NEDD4P46934 1319 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 UTRNP46939 3433 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 CYP2D6P10635 497 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 RPS12P25398 132 aaKnown RBP29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 EVX2Q03828 476 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 TRDNQ13061 729 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 TOB2Q14106 344 aaPredicted RBP29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 MTMR14Q8NCE2 650 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 RNF41Q9H4P4 317 aaPredicted RBP29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 CNNM2Q9H8M5 875 aa29.15■■■□□ 2.26
GTF2A1-201ENST00000298173 PCP11498 1178 aaKnown RBP29.14■■■□□ 2.26
GTF2A1-201ENST00000298173 RALYLQ86SE5 291 aaKnown RBP29.14■■■□□ 2.26
GTF2A1-201ENST00000298173 TMX3Q96JJ7 454 aa29.14■■■□□ 2.26
GTF2A1-201ENST00000298173 DDX4Q9NQI0 724 aaKnown RBP29.14■■■□□ 2.26
GTF2A1-201ENST00000298173 WDR19Q8NEZ3 1342 aa29.14■■■□□ 2.25
GTF2A1-201ENST00000298173 MCM5P33992 734 aa29.13■■■□□ 2.25
GTF2A1-201ENST00000298173 ANTXR2P58335 489 aa29.13■■■□□ 2.25
GTF2A1-201ENST00000298173 ANKRD1Q15327 319 aa29.13■■■□□ 2.25
GTF2A1-201ENST00000298173 IDI2Q9BXS1 227 aa29.13■■■□□ 2.25
GTF2A1-201ENST00000298173 KRT23Q9C075 422 aa29.13■■■□□ 2.25
GTF2A1-201ENST00000298173 LIMCH1Q9UPQ0 1083 aa29.13■■■□□ 2.25
GTF2A1-201ENST00000298173 NPM3O75607 178 aaKnown RBP29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 Q6ZUG5 572 aa29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 DPF2Q92785 391 aa29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 SPDYE2BA6NHP3 402 aa29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 B4E1Z4 1266 aa29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 SPDYE6P0CI01 402 aa29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 ZBED3Q96IU2 234 aaPredicted RBP29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 DDX52Q9Y2R4 599 aaKnown RBP eCLIP29.12■■■□□ 2.25
GTF2A1-201ENST00000298173 ROBO3Q96MS0 1386 aa29.11■■■□□ 2.25
GTF2A1-201ENST00000298173 ZNF541Q9H0D2 1346 aa29.11■■■□□ 2.25
GTF2A1-201ENST00000298173 PLCD1P51178 756 aa29.11■■■□□ 2.25
GTF2A1-201ENST00000298173 ZNF280AP59817 542 aaPredicted RBP29.11■■■□□ 2.25
GTF2A1-201ENST00000298173 CHST3Q7LGC8 479 aa29.11■■■□□ 2.25
GTF2A1-201ENST00000298173 ZSWIM5Q9P217 1185 aa29.11■■■□□ 2.25
GTF2A1-201ENST00000298173 NFIAQ12857 509 aa29.1■■■□□ 2.25
GTF2A1-201ENST00000298173 CYB5R4Q7L1T6 521 aa29.1■■■□□ 2.25
GTF2A1-201ENST00000298173 SAP30BPQ9UHR5 308 aaKnown RBP29.1■■■□□ 2.25
GTF2A1-201ENST00000298173 DLGAP5Q15398 846 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 NOL8Q76FK4 1167 aaKnown RBP29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 LARP6Q9BRS8 491 aaKnown RBP29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 LRRC2Q9BYS8 371 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 TDRD3Q9H7E2 651 aaKnown RBP29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 PRC1O43663 620 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 ORC4O43929 436 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 POLR3DP05423 398 aaPredicted RBP29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 SLC3A2P08195 630 aaKnown RBP29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 PICALMQ13492 652 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 CUL4AQ13619 759 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 AMOTL1Q8IY63 956 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 STK11IPQ8N1F8 1099 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 OSBPL5Q9H0X9 879 aaPredicted RBP29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 TPCN1Q9ULQ1 816 aa29.09■■■□□ 2.25
GTF2A1-201ENST00000298173 KDM4AO75164 1064 aa29.08■■■□□ 2.25
GTF2A1-201ENST00000298173 ZSCAN31Q96LW9 406 aaPredicted RBP29.08■■■□□ 2.25
GTF2A1-201ENST00000298173 FAM198AQ9UFP1 575 aa29.08■■■□□ 2.25
GTF2A1-201ENST00000298173 GMPSP49915 693 aaPredicted RBP29.07■■■□□ 2.24
GTF2A1-201ENST00000298173 SHTN1A0MZ66 631 aa29.06■■■□□ 2.24
GTF2A1-201ENST00000298173 EVCP57679 992 aa29.06■■■□□ 2.24
GTF2A1-201ENST00000298173 MTA3Q9BTC8 594 aa29.06■■■□□ 2.24
GTF2A1-201ENST00000298173 GJA3Q9Y6H8 435 aa29.06■■■□□ 2.24
GTF2A1-201ENST00000298173 CACNB3P54284 484 aa29.05■■■□□ 2.24
GTF2A1-201ENST00000298173 PDE4BQ07343 736 aa29.05■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms