RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 MB21D2Q8IYB1 491 aaPredicted RBP15.3■□□□□ 0.04
HIF3A-201ENST00000244302 BRF1Q92994 677 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 FAM163AQ96GL9 167 aaPredicted RBP15.3■□□□□ 0.04
HIF3A-201ENST00000244302 ZKSCAN3Q9BRR0 538 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 NACAP1Q9BZK3 213 aa15.3■□□□□ 0.04
HIF3A-201ENST00000244302 SCAF8Q9UPN6 1271 aaKnown RBP15.3■□□□□ 0.04
HIF3A-201ENST00000244302 LDHCP07864 332 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 RBM5P52756 815 aaKnown RBP eCLIP15.29■□□□□ 0.04
HIF3A-201ENST00000244302 KRT32Q14532 448 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 TEX11Q8IYF3 940 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 ZNRF3Q9ULT6 936 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 BAG3O95817 575 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 APOBRQ0VD83 1088 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 CDC42EP5Q6NZY7 148 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 ARHGAP27Q6ZUM4 889 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 SLC44A5Q8NCS7 719 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 TOMM22Q9NS69 142 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 USP40Q9NVE5 1235 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 ZSWIM5Q9P217 1185 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 LAMA4Q16363 1823 aa15.29■□□□□ 0.04
HIF3A-201ENST00000244302 PRC1O43663 620 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 KDM4AO75164 1064 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 YBX3P16989 372 aaKnown RBP eCLIP15.28■□□□□ 0.04
HIF3A-201ENST00000244302 PKP1Q13835 747 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 AKNAD1Q5T1N1 836 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 NIM1KQ8IY84 436 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 PRMT6Q96LA8 375 aaPredicted RBP15.28■□□□□ 0.04
HIF3A-201ENST00000244302 LIMCH1Q9UPQ0 1083 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 WDHD1O75717 1129 aaPredicted RBP15.28■□□□□ 0.04
HIF3A-201ENST00000244302 HSP90AA1P07900 732 aaKnown RBP15.28■□□□□ 0.04
HIF3A-201ENST00000244302 VIL1P09327 827 aaKnown RBP15.28■□□□□ 0.04
HIF3A-201ENST00000244302 SOGA3Q5TF21 947 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 RSBN1LQ6PCB5 846 aaPredicted RBP15.28■□□□□ 0.04
HIF3A-201ENST00000244302 CCDC83Q8IWF9 413 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 NCOA7Q8NI08 942 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 BRPF3Q9ULD4 1205 aa15.28■□□□□ 0.04
HIF3A-201ENST00000244302 ZNF646O15015 1829 aaPredicted RBP15.27■□□□□ 0.04
HIF3A-201ENST00000244302 EGFRP00533 1210 aa15.27■□□□□ 0.04
HIF3A-201ENST00000244302 TEKT1Q969V4 418 aa15.27■□□□□ 0.04
HIF3A-201ENST00000244302 GMLQ99445 158 aa15.27■□□□□ 0.04
HIF3A-201ENST00000244302 ATP8A2Q9NTI2 1148 aa15.27■□□□□ 0.04
HIF3A-201ENST00000244302 FER1L6Q2WGJ9 1857 aa15.27■□□□□ 0.03
HIF3A-201ENST00000244302 FLT1P17948 1338 aa15.27■□□□□ 0.03
HIF3A-201ENST00000244302 TCP10Q12799 353 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 GRIPAP1Q4V328 841 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 FAM47AQ5JRC9 791 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 MFSD6Q6ZSS7 791 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 NOL10Q9BSC4 688 aaKnown RBP15.26■□□□□ 0.03
HIF3A-201ENST00000244302 TDRD3Q9H7E2 651 aaKnown RBP15.26■□□□□ 0.03
HIF3A-201ENST00000244302 NMT2O60551 498 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 DDIT3P35638 169 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 CFAP100Q494V2 611 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 L1TD1Q5T7N2 865 aaKnown RBP15.26■□□□□ 0.03
HIF3A-201ENST00000244302 STAG1Q8WVM7 1258 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 SUGT1Q9Y2Z0 365 aa15.26■□□□□ 0.03
HIF3A-201ENST00000244302 ZMYM6O95789 1325 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 RXRAP19793 462 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 CCT2P78371 535 aaKnown RBP15.25■□□□□ 0.03
HIF3A-201ENST00000244302 FGD1P98174 961 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 CUL4AQ13619 759 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 C12orf60Q5U649 245 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 HHIPL2Q6UWX4 724 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 RALYLQ86SE5 291 aaKnown RBP15.25■□□□□ 0.03
HIF3A-201ENST00000244302 JDP2Q8WYK2 163 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 NCOA5Q9HCD5 579 aaKnown RBP15.25■□□□□ 0.03
HIF3A-201ENST00000244302 NAP1L2Q9ULW6 460 aaPredicted RBP15.25■□□□□ 0.03
HIF3A-201ENST00000244302 MAST2Q6P0Q8 1798 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 ZDHHC15Q96MV8 337 aa15.25■□□□□ 0.03
HIF3A-201ENST00000244302 MCM5P33992 734 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 TRDNQ13061 729 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 GIMAP6Q6P9H5 292 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 IGDCC4Q8TDY8 1250 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 CHMP4CQ96CF2 233 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 MYL10Q9BUA6 226 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 ANAPC4Q9UJX5 808 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 GJA3Q9Y6H8 435 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 ZNF541Q9H0D2 1346 aa15.24■□□□□ 0.03
HIF3A-201ENST00000244302 CLRN2A0PK11 232 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 RANBP6O60518 1105 aaKnown RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 POLR3DP05423 398 aaPredicted RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 MCM2P49736 904 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 FKBP1AP62942 108 aaKnown RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 RBM26Q5T8P6 1007 aaKnown RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 SLF2Q8IX21 1173 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 CHAMP1Q96JM3 812 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 FAM196BA6NMK8 535 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 HMGB1P09429 215 aaKnown RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 FOXD4L5Q5VV16 416 aaPredicted RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 CIAPIN1Q6FI81 312 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 FOXD4L4Q8WXT5 416 aaPredicted RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 AGXT2Q9BYV1 514 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 ALDH8A1Q9H2A2 487 aaPredicted RBP15.23■□□□□ 0.03
HIF3A-201ENST00000244302 CHMP5Q9NZZ3 219 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 FAM198AQ9UFP1 575 aa15.23■□□□□ 0.03
HIF3A-201ENST00000244302 SCRN1Q12765 414 aa15.22■□□□□ 0.03
HIF3A-201ENST00000244302 SBK1Q52WX2 424 aa15.22■□□□□ 0.03
HIF3A-201ENST00000244302 SH3BP5LQ7L8J4 393 aa15.22■□□□□ 0.03
HIF3A-201ENST00000244302 CDAN1Q8IWY9 1227 aa15.22■□□□□ 0.03
HIF3A-201ENST00000244302 CCDC144CPQ8IYA2 1237 aa15.22■□□□□ 0.03
HIF3A-201ENST00000244302 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms