RNA–Protein interactions for RNA: tA(UGC)A

TGA1, Transcript of Alanine tRNA (tRNA-Ala), predicted by tRNAscan-SE analysis, yeast

Gene TGA1, Length 73 nt, Biotype tRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TGA1	tA(UGC)A	MYO4	P32492	1471 aa		13.5	□□□□□ -0.25
TGA1	tA(UGC)A	BNI1	P41832	1953 aa		13.5	□□□□□ -0.25
TGA1	tA(UGC)A	NUP159	P40477	1460 aa		13.48	□□□□□ -0.25
TGA1	tA(UGC)A	GEA2	P39993	1459 aa	Known RBP	13.42	□□□□□ -0.26
TGA1	tA(UGC)A	YTA7	P40340	1379 aa		13.41	□□□□□ -0.26
TGA1	tA(UGC)A	SNQ2	P32568	1501 aa	Known RBP	13.4	□□□□□ -0.26
TGA1	tA(UGC)A	VPS15	P22219	1454 aa		13.4	□□□□□ -0.26
TGA1	tA(UGC)A	SNT2	P53127	1403 aa		13.33	□□□□□ -0.28
TGA1	tA(UGC)A	ULS1	Q08562	1619 aa		13.25	□□□□□ -0.29
TGA1	tA(UGC)A	MLP2	P40457	1679 aa		13.24	□□□□□ -0.29
TGA1	tA(UGC)A	ITT1	Q04638	464 aa		13.22	□□□□□ -0.29
TGA1	tA(UGC)A	PDR12	Q02785	1511 aa		13.21	□□□□□ -0.29
TGA1	tA(UGC)A	SPO14	P36126	1683 aa		13.21	□□□□□ -0.3
TGA1	tA(UGC)A	DRS2	P39524	1355 aa		13.18	□□□□□ -0.3
TGA1	tA(UGC)A	STH1	P32597	1359 aa		13.17	□□□□□ -0.3
TGA1	tA(UGC)A	IRC20	Q06554	1556 aa		13.15	□□□□□ -0.3
TGA1	tA(UGC)A	NUP170	P38181	1502 aa		13.13	□□□□□ -0.31
TGA1	tA(UGC)A	PDR15	Q04182	1529 aa	Known RBP	13.13	□□□□□ -0.31
TGA1	tA(UGC)A	GDB1	Q06625	1536 aa		13.13	□□□□□ -0.31
TGA1	tA(UGC)A	MMS1	Q06211	1407 aa		13.13	□□□□□ -0.31
TGA1	tA(UGC)A	DNF2	Q12675	1612 aa		13.07	□□□□□ -0.32
TGA1	tA(UGC)A	MET10	P39692	1035 aa		13.03	□□□□□ -0.32
TGA1	tA(UGC)A	DOP1	Q03921	1698 aa		13.02	□□□□□ -0.33
TGA1	tA(UGC)A	IQG1	Q12280	1495 aa		12.98	□□□□□ -0.33
TGA1	tA(UGC)A	PDR10	P51533	1564 aa		12.97	□□□□□ -0.33
TGA1	tA(UGC)A	TRM3	Q07527	1436 aa		12.96	□□□□□ -0.33
TGA1	tA(UGC)A	MIF2	P35201	549 aa		12.96	□□□□□ -0.33
TGA1	tA(UGC)A	NUP157	P40064	1391 aa	Known RBP	12.94	□□□□□ -0.34
TGA1	tA(UGC)A	TY3B-G	Q99315	1547 aa		12.93	□□□□□ -0.34
TGA1	tA(UGC)A	YBT1	P32386	1661 aa		12.92	□□□□□ -0.34
TGA1	tA(UGC)A	BUD3	P25558	1636 aa		12.91	□□□□□ -0.34
TGA1	tA(UGC)A	RTT106	P40161	455 aa		12.91	□□□□□ -0.34
TGA1	tA(UGC)A	ARO1	P08566	1588 aa	Known RBP	12.88	□□□□□ -0.35
TGA1	tA(UGC)A	CHC1	P22137	1653 aa	Known RBP	12.88	□□□□□ -0.35
TGA1	tA(UGC)A	SAS10	Q12136	610 aa	Predicted RBP	12.85	□□□□□ -0.35
TGA1	tA(UGC)A	GEA1	P47102	1408 aa	Predicted RBP	12.85	□□□□□ -0.35
TGA1	tA(UGC)A	ABP1	P15891	592 aa	Known RBP	12.83	□□□□□ -0.36
TGA1	tA(UGC)A	CAT8	P39113	1433 aa		12.82	□□□□□ -0.36
TGA1	tA(UGC)A	TAF7	Q05021	590 aa		12.82	□□□□□ -0.36
TGA1	tA(UGC)A	SEC7	P11075	2009 aa	Known RBP	12.76	□□□□□ -0.37
TGA1	tA(UGC)A	YOR093C	Q12275	1648 aa		12.74	□□□□□ -0.37
TGA1	tA(UGC)A	YSP2	Q06681	1438 aa		12.71	□□□□□ -0.38
TGA1	tA(UGC)A	IFH1	P39520	1085 aa		12.69	□□□□□ -0.38
TGA1	tA(UGC)A	DNF3	Q12674	1656 aa		12.63	□□□□□ -0.39
TGA1	tA(UGC)A	YFR006W	P43590	535 aa		12.55	□□□□□ -0.4
TGA1	tA(UGC)A	BNR1	P40450	1375 aa		12.53	□□□□□ -0.4
TGA1	tA(UGC)A	SRB8	P25648	1427 aa		12.5	□□□□□ -0.41
TGA1	tA(UGC)A	CKB1	P43639	278 aa		12.46	□□□□□ -0.41
TGA1	tA(UGC)A	NUP188	P52593	1655 aa	Known RBP	12.4	□□□□□ -0.42
TGA1	tA(UGC)A	HAP1	P0CE41	1502 aa		12.39	□□□□□ -0.43
TGA1	tA(UGC)A	YAP3	P38749	330 aa		12.39	□□□□□ -0.43
TGA1	tA(UGC)A	VMR1	P38735	1592 aa		12.38	□□□□□ -0.43
TGA1	tA(UGC)A	IML1	P47170	1584 aa		12.34	□□□□□ -0.43
TGA1	tA(UGC)A	IKI3	Q06706	1349 aa	Known RBP	12.29	□□□□□ -0.44
TGA1	tA(UGC)A	USO1	P25386	1790 aa		12.28	□□□□□ -0.44
TGA1	tA(UGC)A	PDR5	P33302	1511 aa	Known RBP	12.24	□□□□□ -0.45
TGA1	tA(UGC)A	MAK10	Q02197	733 aa		12.23	□□□□□ -0.45
TGA1	tA(UGC)A	URN1	Q06525	465 aa	Known RBP	12.22	□□□□□ -0.45
TGA1	tA(UGC)A	BUD21	Q08492	214 aa	Predicted RBP	12.21	□□□□□ -0.45
TGA1	tA(UGC)A	SSM4	P40318	1319 aa		12.2	□□□□□ -0.46
TGA1	tA(UGC)A	IPL1	P38991	367 aa		12.19	□□□□□ -0.46
TGA1	tA(UGC)A	GCN2	P15442	1659 aa		12.19	□□□□□ -0.46
TGA1	tA(UGC)A	TY1B-NL2	Q99337	1749 aa	Known RBP	12.17	□□□□□ -0.46
TGA1	tA(UGC)A	TYS1	P36421	394 aa	Known RBP	12.13	□□□□□ -0.47
TGA1	tA(UGC)A	PDR11	P40550	1411 aa		12.11	□□□□□ -0.47
TGA1	tA(UGC)A	YMR196W	Q04336	1088 aa		11.94	□□□□□ -0.5
TGA1	tA(UGC)A	NUP192	P47054	1683 aa		11.93	□□□□□ -0.5
TGA1	tA(UGC)A	CFT1	Q06632	1357 aa	Known RBP	11.92	□□□□□ -0.5
TGA1	tA(UGC)A	THI12	P42883	340 aa		11.92	□□□□□ -0.5
TGA1	tA(UGC)A	THI5	P43534	340 aa		11.92	□□□□□ -0.5
TGA1	tA(UGC)A	THI11	P47183	340 aa		11.92	□□□□□ -0.5
TGA1	tA(UGC)A	THI13	Q07748	340 aa		11.92	□□□□□ -0.5
TGA1	tA(UGC)A	RAV1	P47104	1357 aa		11.92	□□□□□ -0.5
TGA1	tA(UGC)A	BCK1	Q01389	1478 aa		11.9	□□□□□ -0.5
TGA1	tA(UGC)A	KRE5	P22023	1365 aa		11.85	□□□□□ -0.51
TGA1	tA(UGC)A	RTC1	Q08281	1341 aa		11.79	□□□□□ -0.52
TGA1	tA(UGC)A	RAD9	P14737	1309 aa		11.72	□□□□□ -0.53
TGA1	tA(UGC)A	YNR029C	P53729	429 aa	Known RBP	11.72	□□□□□ -0.53
TGA1	tA(UGC)A	RIA1	P53893	1110 aa		11.72	□□□□□ -0.53
TGA1	tA(UGC)A	PAF1	P38351	445 aa		11.7	□□□□□ -0.54
TGA1	tA(UGC)A	BFR2	Q06631	534 aa	Known RBP	11.7	□□□□□ -0.54
TGA1	tA(UGC)A	MRX12	P47084	519 aa		11.68	□□□□□ -0.54
TGA1	tA(UGC)A	PTP3	P40048	928 aa		11.67	□□□□□ -0.54
TGA1	tA(UGC)A	ALD4	P46367	519 aa	Known RBP	11.67	□□□□□ -0.54
TGA1	tA(UGC)A	TY3B-I	Q7LHG5	1498 aa	Known RBP	11.67	□□□□□ -0.54
TGA1	tA(UGC)A	CAB1	Q04430	367 aa		11.66	□□□□□ -0.54
TGA1	tA(UGC)A	YAH1	Q12184	172 aa	Known RBP	11.64	□□□□□ -0.55
TGA1	tA(UGC)A	NOP7	P53261	605 aa	Known RBP	11.59	□□□□□ -0.55
TGA1	tA(UGC)A	RRP5	Q05022	1729 aa	Known RBP	11.57	□□□□□ -0.56
TGA1	tA(UGC)A	YRF1-2	P40105	1681 aa		11.55	□□□□□ -0.56
TGA1	tA(UGC)A	TY4B-H	P0C2J7	1802 aa		11.54	□□□□□ -0.56
TGA1	tA(UGC)A	TY4B-J	P47024	1803 aa		11.54	□□□□□ -0.56
TGA1	tA(UGC)A	APP1	P53933	587 aa		11.53	□□□□□ -0.56
TGA1	tA(UGC)A	ESL2	P36168	1195 aa		11.49	□□□□□ -0.57
TGA1	tA(UGC)A	REB1	P21538	810 aa		11.48	□□□□□ -0.57
TGA1	tA(UGC)A	TAF8	Q03750	510 aa		11.47	□□□□□ -0.57
TGA1	tA(UGC)A	CPS1	P27614	576 aa		11.46	□□□□□ -0.57
TGA1	tA(UGC)A	TAF5	P38129	798 aa		11.45	□□□□□ -0.58
TGA1	tA(UGC)A	YIL055C	P40523	627 aa	Known RBP	11.45	□□□□□ -0.58
TGA1	tA(UGC)A	GLN1	P32288	370 aa	Known RBP	11.44	□□□□□ -0.58

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms