RNA–Protein interactions for RNA: YPL045W

VPS16, Transcript of Subunit of the HOPS and the CORVET complexes, yeastyeast

Gene VPS16, Length 2,397 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS16YPL045W SUB2Q07478 446 aaKnown RBP3.59□□□□□ -1.83
VPS16YPL045W DBP1P24784 617 aaKnown RBP3.59□□□□□ -1.84
VPS16YPL045W PTC3P34221 468 aaKnown RBP3.59□□□□□ -1.84
VPS16YPL045W YFR006WP43590 535 aa3.59□□□□□ -1.84
VPS16YPL045W GEF1P37020 779 aa3.58□□□□□ -1.84
VPS16YPL045W YDR090CQ03193 310 aa3.58□□□□□ -1.84
VPS16YPL045W MAP2P38174 421 aaKnown RBP3.57□□□□□ -1.84
VPS16YPL045W SSA2P10592 639 aaKnown RBP3.56□□□□□ -1.84
VPS16YPL045W UBP14P38237 781 aaKnown RBP3.56□□□□□ -1.84
VPS16YPL045W BIM1P40013 344 aa3.56□□□□□ -1.84
VPS16YPL045W GLN1P32288 370 aaKnown RBP3.56□□□□□ -1.84
VPS16YPL045W VHR2P40041 505 aa3.56□□□□□ -1.84
VPS16YPL045W CSN12P47130 423 aa3.56□□□□□ -1.84
VPS16YPL045W YJL007CP47080 104 aa3.55□□□□□ -1.84
VPS16YPL045W ATG32P40458 529 aa3.55□□□□□ -1.84
VPS16YPL045W UBP10P53874 792 aaPredicted RBP3.55□□□□□ -1.84
VPS16YPL045W YOR238WQ08634 303 aa3.54□□□□□ -1.84
VPS16YPL045W PSE1P32337 1089 aaKnown RBP3.53□□□□□ -1.84
VPS16YPL045W SLX5P32828 619 aaKnown RBP3.53□□□□□ -1.84
VPS16YPL045W YLR326WQ06170 240 aaKnown RBP3.53□□□□□ -1.84
VPS16YPL045W AIM44Q99299 758 aa3.53□□□□□ -1.84
VPS16YPL045W SSA4P22202 642 aaKnown RBP3.53□□□□□ -1.84
VPS16YPL045W KTR1P27810 393 aaKnown RBP3.52□□□□□ -1.85
VPS16YPL045W TIF1P10081 395 aaKnown RBP3.52□□□□□ -1.85
VPS16YPL045W ORC1P54784 914 aaPredicted RBP3.51□□□□□ -1.85
VPS16YPL045W ERG12P07277 443 aa3.51□□□□□ -1.85
VPS16YPL045W PCS60P38137 543 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
VPS16YPL045W KIC1P38692 1080 aa3.51□□□□□ -1.85
VPS16YPL045W TYW1Q08960 810 aaKnown RBP3.5□□□□□ -1.85
VPS16YPL045W CPS1P27614 576 aa3.49□□□□□ -1.85
VPS16YPL045W GUT1P32190 709 aa3.49□□□□□ -1.85
VPS16YPL045W RPL34BP40525 121 aaKnown RBP3.49□□□□□ -1.85
VPS16YPL045W TEA1P47988 759 aa3.49□□□□□ -1.85
VPS16YPL045W ATH1P48016 1211 aa3.49□□□□□ -1.85
VPS16YPL045W YGR273CP53329 174 aa3.49□□□□□ -1.85
VPS16YPL045W VMA1P17255 1071 aaKnown RBP3.49□□□□□ -1.85
VPS16YPL045W PIB1Q06651 286 aa3.49□□□□□ -1.85
VPS16YPL045W GRE2Q12068 342 aaKnown RBP3.49□□□□□ -1.85
VPS16YPL045W KEX1P09620 729 aa3.48□□□□□ -1.85
VPS16YPL045W RAD54P32863 898 aa3.48□□□□□ -1.85
VPS16YPL045W MRX12P47084 519 aa3.48□□□□□ -1.85
VPS16YPL045W YBL036CP38197 257 aa3.48□□□□□ -1.85
VPS16YPL045W ORC6P38826 435 aa3.48□□□□□ -1.85
VPS16YPL045W NOB1Q08444 459 aaKnown RBP3.48□□□□□ -1.85
VPS16YPL045W BIO2P32451 375 aa3.47□□□□□ -1.85
VPS16YPL045W RTG2P32608 588 aaKnown RBP3.47□□□□□ -1.85
VPS16YPL045W TTI1P36097 1038 aa3.47□□□□□ -1.85
VPS16YPL045W YPR204WQ08995 1032 aa3.47□□□□□ -1.85
VPS16YPL045W SLD2P34252 453 aa3.47□□□□□ -1.85
VPS16YPL045W SOL3P38858 249 aa3.47□□□□□ -1.85
VPS16YPL045W RPL34AP87262 121 aaPredicted RBP3.47□□□□□ -1.85
VPS16YPL045W RGR1P19263 1082 aa3.46□□□□□ -1.86
VPS16YPL045W NSR1P27476 414 aaKnown RBP RIP-Chip data3.46□□□□□ -1.86not detected
VPS16YPL045W CDC3P32457 520 aaKnown RBP3.45□□□□□ -1.86
VPS16YPL045W YAP5P40574 245 aa3.45□□□□□ -1.86
VPS16YPL045W NOP7P53261 605 aaKnown RBP3.45□□□□□ -1.86
VPS16YPL045W YNL108CP53929 270 aa3.45□□□□□ -1.86
VPS16YPL045W NIS1P53939 407 aa3.45□□□□□ -1.86
VPS16YPL045W NAP1P25293 417 aaKnown RBP3.45□□□□□ -1.86
VPS16YPL045W MVP1P40959 511 aaKnown RBP3.45□□□□□ -1.86
VPS16YPL045W CSE4P36012 229 aa3.44□□□□□ -1.86
VPS16YPL045W RAD59Q12223 238 aa3.44□□□□□ -1.86
VPS16YPL045W SUP45P12385 437 aaKnown RBP3.44□□□□□ -1.86
VPS16YPL045W SSF1P38789 453 aaPredicted RBP3.44□□□□□ -1.86
VPS16YPL045W SNU71P53207 620 aaKnown RBP3.44□□□□□ -1.86
VPS16YPL045W HST2P53686 357 aa3.44□□□□□ -1.86
VPS16YPL045W FPK1P53739 893 aa3.44□□□□□ -1.86
VPS16YPL045W SEN54Q02825 467 aaPredicted RBP3.44□□□□□ -1.86
VPS16YPL045W PUP1P25043 261 aa3.43□□□□□ -1.86
VPS16YPL045W SCJ1P25303 377 aa3.43□□□□□ -1.86
VPS16YPL045W CLB5P30283 435 aa3.43□□□□□ -1.86
VPS16YPL045W NST1P53935 1240 aa3.43□□□□□ -1.86
VPS16YPL045W YML083CQ04526 418 aa3.43□□□□□ -1.86
VPS16YPL045W SAM3Q08986 587 aa3.43□□□□□ -1.86
VPS16YPL045W PKH3Q03306 898 aaPredicted RBP3.43□□□□□ -1.86
VPS16YPL045W MMP1Q12372 583 aa3.43□□□□□ -1.86
VPS16YPL045W ESS1P22696 170 aa3.42□□□□□ -1.86
VPS16YPL045W HEM3P28789 327 aa3.42□□□□□ -1.86
VPS16YPL045W GYP5Q12344 894 aa3.42□□□□□ -1.86
VPS16YPL045W GAP1P19145 602 aaPredicted RBP3.41□□□□□ -1.86
VPS16YPL045W YDJ1P25491 409 aaKnown RBP3.41□□□□□ -1.86
VPS16YPL045W YJU3P28321 313 aa3.41□□□□□ -1.86
VPS16YPL045W PAM1P37304 830 aaKnown RBP3.41□□□□□ -1.86
VPS16YPL045W YMR196WQ04336 1088 aa3.41□□□□□ -1.86
VPS16YPL045W HAT1Q12341 374 aa3.41□□□□□ -1.86
VPS16YPL045W ENO1P00924 437 aaKnown RBP3.41□□□□□ -1.86
VPS16YPL045W RRN6P32786 894 aa3.41□□□□□ -1.86
VPS16YPL045W IOC4Q04213 475 aa3.41□□□□□ -1.86
VPS16YPL045W ENO2P00925 437 aaKnown RBP3.4□□□□□ -1.86
VPS16YPL045W MRX10Q05648 414 aa3.4□□□□□ -1.86
VPS16YPL045W ARG8P18544 423 aa3.4□□□□□ -1.87
VPS16YPL045W MET10P39692 1035 aa3.4□□□□□ -1.87
VPS16YPL045W TIF4632P39936 914 aaKnown RBP3.4□□□□□ -1.87
VPS16YPL045W SIS2P36024 562 aa3.39□□□□□ -1.87
VPS16YPL045W YPR109WQ06104 294 aa3.39□□□□□ -1.87
VPS16YPL045W SIT4P20604 311 aa3.39□□□□□ -1.87
VPS16YPL045W TGL4P36165 910 aa3.39□□□□□ -1.87
VPS16YPL045W ILV3P39522 585 aaKnown RBP3.39□□□□□ -1.87
VPS16YPL045W RIM21P48565 533 aa3.39□□□□□ -1.87
VPS16YPL045W AI4P03878 556 aa3.38□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 6.4 ms