RNA–Protein interactions for RNA: YPL004C

LSP1, Transcript of Eisosome core component, yeastyeast

Gene LSP1, Length 1,026 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSP1YPL004C NTE1Q04958 1679 aa12.77□□□□□ -0.37
LSP1YPL004C RPO21P04050 1733 aaKnown RBP12.75□□□□□ -0.37
LSP1YPL004C NUP159P40477 1460 aa12.75□□□□□ -0.37
LSP1YPL004C SNQ2P32568 1501 aaKnown RBP12.69□□□□□ -0.38
LSP1YPL004C STH1P32597 1359 aa12.68□□□□□ -0.38
LSP1YPL004C SNT2P53127 1403 aa12.67□□□□□ -0.38
LSP1YPL004C BNI1P41832 1953 aa12.65□□□□□ -0.38
LSP1YPL004C GEA2P39993 1459 aaKnown RBP12.64□□□□□ -0.39
LSP1YPL004C VPS15P22219 1454 aa12.63□□□□□ -0.39
LSP1YPL004C MLP2P40457 1679 aa12.58□□□□□ -0.4
LSP1YPL004C ULS1Q08562 1619 aa12.55□□□□□ -0.4
LSP1YPL004C MET10P39692 1035 aa12.54□□□□□ -0.4
LSP1YPL004C ITT1Q04638 464 aa12.54□□□□□ -0.4
LSP1YPL004C SAS10Q12136 610 aaPredicted RBP12.52□□□□□ -0.41
LSP1YPL004C TAF7Q05021 590 aa12.51□□□□□ -0.41
LSP1YPL004C PDR15Q04182 1529 aaKnown RBP12.51□□□□□ -0.41
LSP1YPL004C RTT106P40161 455 aa12.5□□□□□ -0.41
LSP1YPL004C PDR12Q02785 1511 aa12.5□□□□□ -0.41
LSP1YPL004C SPO14P36126 1683 aa12.49□□□□□ -0.41
LSP1YPL004C DRS2P39524 1355 aa12.47□□□□□ -0.41
LSP1YPL004C IRC20Q06554 1556 aa12.44□□□□□ -0.42
LSP1YPL004C NUP170P38181 1502 aa12.41□□□□□ -0.42
LSP1YPL004C GDB1Q06625 1536 aa12.4□□□□□ -0.42
LSP1YPL004C MMS1Q06211 1407 aa12.38□□□□□ -0.43
LSP1YPL004C NUP157P40064 1391 aaKnown RBP12.34□□□□□ -0.43
LSP1YPL004C GEA1P47102 1408 aaPredicted RBP12.33□□□□□ -0.44
LSP1YPL004C IFH1P39520 1085 aa12.32□□□□□ -0.44
LSP1YPL004C IQG1Q12280 1495 aa12.32□□□□□ -0.44
LSP1YPL004C PDR10P51533 1564 aa12.31□□□□□ -0.44
LSP1YPL004C BUD3P25558 1636 aa12.29□□□□□ -0.44
LSP1YPL004C CAT8P39113 1433 aa12.28□□□□□ -0.44
LSP1YPL004C DOP1Q03921 1698 aa12.27□□□□□ -0.45
LSP1YPL004C TY3B-GQ99315 1547 aa12.27□□□□□ -0.45
LSP1YPL004C YBT1P32386 1661 aa12.26□□□□□ -0.45
LSP1YPL004C TRM3Q07527 1436 aa12.24□□□□□ -0.45
LSP1YPL004C DNF2Q12675 1612 aa12.24□□□□□ -0.45
LSP1YPL004C SEC7P11075 2009 aaKnown RBP12.23□□□□□ -0.45
LSP1YPL004C ABP1P15891 592 aaKnown RBP12.21□□□□□ -0.45
LSP1YPL004C MIF2P35201 549 aa12.21□□□□□ -0.45
LSP1YPL004C ARO1P08566 1588 aaKnown RBP12.15□□□□□ -0.46
LSP1YPL004C CHC1P22137 1653 aaKnown RBP12.13□□□□□ -0.47
LSP1YPL004C YSP2Q06681 1438 aa12.11□□□□□ -0.47
LSP1YPL004C CKB1P43639 278 aa12.07□□□□□ -0.48
LSP1YPL004C BNR1P40450 1375 aa12.02□□□□□ -0.49
LSP1YPL004C SRB8P25648 1427 aa12.01□□□□□ -0.49
LSP1YPL004C YOR093CQ12275 1648 aa11.99□□□□□ -0.49
LSP1YPL004C IKI3Q06706 1349 aaKnown RBP11.95□□□□□ -0.5
LSP1YPL004C YAP3P38749 330 aa11.9□□□□□ -0.5
LSP1YPL004C FAP1P53971 965 aa11.88□□□□□ -0.51
LSP1YPL004C DNF3Q12674 1656 aa11.87□□□□□ -0.51
LSP1YPL004C BUD21Q08492 214 aaPredicted RBP11.86□□□□□ -0.51
LSP1YPL004C URN1Q06525 465 aaKnown RBP11.84□□□□□ -0.51
LSP1YPL004C YFR006WP43590 535 aa11.82□□□□□ -0.52
LSP1YPL004C SSM4P40318 1319 aa11.8□□□□□ -0.52
LSP1YPL004C NUP188P52593 1655 aaKnown RBP11.78□□□□□ -0.52
LSP1YPL004C IPL1P38991 367 aa11.74□□□□□ -0.53
LSP1YPL004C HAP1P0CE41 1502 aa11.73□□□□□ -0.53
LSP1YPL004C VMR1P38735 1592 aa11.71□□□□□ -0.53
LSP1YPL004C MAK10Q02197 733 aa11.71□□□□□ -0.53
LSP1YPL004C GCN2P15442 1659 aa11.69□□□□□ -0.54
LSP1YPL004C TYS1P36421 394 aaKnown RBP11.65□□□□□ -0.54
LSP1YPL004C IML1P47170 1584 aa11.64□□□□□ -0.55
LSP1YPL004C PDR5P33302 1511 aaKnown RBP11.64□□□□□ -0.55
LSP1YPL004C USO1P25386 1790 aa11.62□□□□□ -0.55
LSP1YPL004C PDR11P40550 1411 aa11.56□□□□□ -0.56
LSP1YPL004C TY1B-NL2Q99337 1749 aaKnown RBP11.55□□□□□ -0.56
LSP1YPL004C YMR196WQ04336 1088 aa11.48□□□□□ -0.57
LSP1YPL004C RAV1P47104 1357 aa11.45□□□□□ -0.58
LSP1YPL004C PAF1P38351 445 aa11.45□□□□□ -0.58
LSP1YPL004C BFR2Q06631 534 aaKnown RBP11.4□□□□□ -0.58
LSP1YPL004C RTC1Q08281 1341 aa11.39□□□□□ -0.59
LSP1YPL004C THI12P42883 340 aa11.39□□□□□ -0.59
LSP1YPL004C THI5P43534 340 aa11.39□□□□□ -0.59
LSP1YPL004C THI11P47183 340 aa11.39□□□□□ -0.59
LSP1YPL004C THI13Q07748 340 aa11.39□□□□□ -0.59
LSP1YPL004C BCK1Q01389 1478 aa11.37□□□□□ -0.59
LSP1YPL004C CFT1Q06632 1357 aaKnown RBP11.36□□□□□ -0.59
LSP1YPL004C NUP192P47054 1683 aa11.36□□□□□ -0.59
LSP1YPL004C NOP7P53261 605 aaKnown RBP11.34□□□□□ -0.59
LSP1YPL004C KRE5P22023 1365 aa11.33□□□□□ -0.6
LSP1YPL004C MRX12P47084 519 aa11.32□□□□□ -0.6
LSP1YPL004C ALD4P46367 519 aaKnown RBP11.31□□□□□ -0.6
LSP1YPL004C PRY3P47033 881 aa11.3□□□□□ -0.6
LSP1YPL004C RIA1P53893 1110 aa11.3□□□□□ -0.6
LSP1YPL004C RAD9P14737 1309 aa11.28□□□□□ -0.6
LSP1YPL004C YNR029CP53729 429 aaKnown RBP11.27□□□□□ -0.61
LSP1YPL004C CAB1Q04430 367 aa11.26□□□□□ -0.61
LSP1YPL004C ESL2P36168 1195 aa11.21□□□□□ -0.61
LSP1YPL004C TAF5P38129 798 aa11.16□□□□□ -0.62
LSP1YPL004C NAP1P25293 417 aaKnown RBP11.15□□□□□ -0.62
LSP1YPL004C PTP3P40048 928 aa11.15□□□□□ -0.62
LSP1YPL004C TAF8Q03750 510 aa11.13□□□□□ -0.63
LSP1YPL004C TY3B-IQ7LHG5 1498 aaKnown RBP11.12□□□□□ -0.63
LSP1YPL004C YAH1Q12184 172 aaKnown RBP11.11□□□□□ -0.63
LSP1YPL004C CPS1P27614 576 aa11.06□□□□□ -0.64
LSP1YPL004C SPE2P21182 396 aa11.03□□□□□ -0.64
LSP1YPL004C KIP3P53086 805 aaKnown RBP11.03□□□□□ -0.64
LSP1YPL004C RCM1P53972 490 aa11.03□□□□□ -0.64
LSP1YPL004C PPH3P32345 308 aa11.01□□□□□ -0.65
LSP1YPL004C APP1P53933 587 aa11□□□□□ -0.65
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms