RNA–Protein interactions for RNA: YOR239W

ABP140, Transcript of AdoMet-dependent tRNA methyltransferase and actin binding protein, yeast

Gene ABP140, Length 1,887 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ABP140	YOR239W	SPP41	P38904	1435 aa		4.81	□□□□□ -1.64
ABP140	YOR239W	BDF1	P35817	686 aa		4.8	□□□□□ -1.64
ABP140	YOR239W	POL5	P39985	1022 aa	Known RBP	4.79	□□□□□ -1.64
ABP140	YOR239W	SPT7	P35177	1332 aa		4.79	□□□□□ -1.64
ABP140	YOR239W	ECM5	Q03214	1411 aa		4.79	□□□□□ -1.64
ABP140	YOR239W	FPR3	P38911	411 aa	Known RBP	4.79	□□□□□ -1.64
ABP140	YOR239W	YGR130C	P53278	816 aa		4.79	□□□□□ -1.64
ABP140	YOR239W	XRN1	P22147	1528 aa	Known RBP	4.78	□□□□□ -1.64
ABP140	YOR239W	NUG1	P40010	520 aa	Known RBP	4.78	□□□□□ -1.64
ABP140	YOR239W	ENV11	P53246	860 aa		4.77	□□□□□ -1.65
ABP140	YOR239W	DEF1	P35732	738 aa	Known RBP	4.77	□□□□□ -1.65
ABP140	YOR239W	FKH1	P40466	484 aa		4.77	□□□□□ -1.65
ABP140	YOR239W	WSC3	Q12215	556 aa		4.76	□□□□□ -1.65
ABP140	YOR239W	OPY1	P38271	328 aa		4.75	□□□□□ -1.65
ABP140	YOR239W	RCR1	P38212	213 aa		4.74	□□□□□ -1.65
ABP140	YOR239W	RIX1	P38883	763 aa	Predicted RBP	4.73	□□□□□ -1.65
ABP140	YOR239W	TIF11	P38912	153 aa	Known RBP	4.73	□□□□□ -1.65
ABP140	YOR239W	BBC1	P47068	1157 aa		4.73	□□□□□ -1.65
ABP140	YOR239W	EAF7	P53911	425 aa	Known RBP	4.73	□□□□□ -1.65
ABP140	YOR239W	YAP5	P40574	245 aa		4.73	□□□□□ -1.65
ABP140	YOR239W	IKI3	Q06706	1349 aa	Known RBP	4.72	□□□□□ -1.65
ABP140	YOR239W	TRM732	Q03496	1420 aa		4.72	□□□□□ -1.65
ABP140	YOR239W	RAM2	P29703	316 aa		4.72	□□□□□ -1.65
ABP140	YOR239W	SPT6	P23615	1451 aa	Known RBP	4.71	□□□□□ -1.65
ABP140	YOR239W	PEP1	P32319	1579 aa		4.71	□□□□□ -1.66
ABP140	YOR239W	MRM1	P25270	412 aa		4.71	□□□□□ -1.66
ABP140	YOR239W	SAS10	Q12136	610 aa	Predicted RBP	4.71	□□□□□ -1.66
ABP140	YOR239W	HSL1	P34244	1518 aa		4.7	□□□□□ -1.66
ABP140	YOR239W	RNA1	P11745	407 aa	Known RBP	4.7	□□□□□ -1.66
ABP140	YOR239W	SNF7	P39929	240 aa	Known RBP	4.7	□□□□□ -1.66
ABP140	YOR239W	FPR4	Q06205	392 aa	Predicted RBP	4.69	□□□□□ -1.66
ABP140	YOR239W	BMT6	Q12291	365 aa		4.69	□□□□□ -1.66
ABP140	YOR239W	CFT1	Q06632	1357 aa	Known RBP	4.68	□□□□□ -1.66
ABP140	YOR239W	PAF1	P38351	445 aa		4.68	□□□□□ -1.66
ABP140	YOR239W	TOP2	P06786	1428 aa	Known RBP	4.67	□□□□□ -1.66
ABP140	YOR239W	GTT3	P39996	337 aa		4.67	□□□□□ -1.66
ABP140	YOR239W	SRB8	P25648	1427 aa		4.67	□□□□□ -1.66
ABP140	YOR239W	YTA7	P40340	1379 aa		4.67	□□□□□ -1.66
ABP140	YOR239W	SPT2	P06843	333 aa	Predicted RBP	4.66	□□□□□ -1.66
ABP140	YOR239W	RPC31	P17890	251 aa		4.66	□□□□□ -1.66
ABP140	YOR239W	SPC110	P32380	944 aa		4.66	□□□□□ -1.66
ABP140	YOR239W	BUD4	P47136	1447 aa		4.66	□□□□□ -1.66
ABP140	YOR239W	VPS29	P38759	282 aa		4.66	□□□□□ -1.66
ABP140	YOR239W	HSP82	P02829	709 aa	Known RBP	4.65	□□□□□ -1.66
ABP140	YOR239W	FUN12	P39730	1002 aa	Known RBP	4.65	□□□□□ -1.66
ABP140	YOR239W	PLP2	Q12017	286 aa		4.65	□□□□□ -1.66
ABP140	YOR239W	LDB19	Q12502	818 aa		4.65	□□□□□ -1.66
ABP140	YOR239W	ROX1	P25042	368 aa		4.64	□□□□□ -1.67
ABP140	YOR239W	NMD2	P38798	1089 aa	Known RBP	4.64	□□□□□ -1.67
ABP140	YOR239W	PSH1	Q12161	406 aa		4.64	□□□□□ -1.67
ABP140	YOR239W	YLR419W	Q06698	1435 aa	Known RBP	4.64	□□□□□ -1.67
ABP140	YOR239W	NUP170	P38181	1502 aa		4.63	□□□□□ -1.67
ABP140	YOR239W	MDS3	P53094	1487 aa		4.63	□□□□□ -1.67
ABP140	YOR239W	RTG3	P38165	486 aa		4.63	□□□□□ -1.67
ABP140	YOR239W	ULI1	P43604	169 aa		4.63	□□□□□ -1.67
ABP140	YOR239W	PDR10	P51533	1564 aa		4.62	□□□□□ -1.67
ABP140	YOR239W	NOP58	Q12499	511 aa	Known RBP	4.62	□□□□□ -1.67
ABP140	YOR239W	MMS1	Q06211	1407 aa		4.62	□□□□□ -1.67
ABP140	YOR239W	NAP1	P25293	417 aa	Known RBP	4.62	□□□□□ -1.67
ABP140	YOR239W	MIF2	P35201	549 aa		4.62	□□□□□ -1.67
ABP140	YOR239W	SSM4	P40318	1319 aa		4.61	□□□□□ -1.67
ABP140	YOR239W	THO2	P53552	1597 aa	Known RBP	4.61	□□□□□ -1.67
ABP140	YOR239W	REV3	P14284	1504 aa		4.61	□□□□□ -1.67
ABP140	YOR239W	YIR014W	P40570	242 aa		4.61	□□□□□ -1.67
ABP140	YOR239W	CTR9	P89105	1077 aa		4.6	□□□□□ -1.67
ABP140	YOR239W	IOC2	Q12072	812 aa		4.6	□□□□□ -1.67
ABP140	YOR239W	SMC3	P47037	1230 aa		4.6	□□□□□ -1.67
ABP140	YOR239W	HIR3	P47171	1648 aa		4.59	□□□□□ -1.67
ABP140	YOR239W	STS1	P38637	319 aa		4.59	□□□□□ -1.67
ABP140	YOR239W	SLN1	P39928	1220 aa	Predicted RBP	4.59	□□□□□ -1.67
ABP140	YOR239W	VPS4	P52917	437 aa		4.59	□□□□□ -1.67
ABP140	YOR239W	PIL1	P53252	339 aa	Known RBP	4.59	□□□□□ -1.67
ABP140	YOR239W	YNL011C	P53980	444 aa		4.59	□□□□□ -1.67
ABP140	YOR239W	MYO4	P32492	1471 aa		4.58	□□□□□ -1.68
ABP140	YOR239W	YPK9	Q12697	1472 aa		4.58	□□□□□ -1.68
ABP140	YOR239W	MAK11	P20484	414 aa	Known RBP	4.58	□□□□□ -1.68
ABP140	YOR239W	RAD26	P40352	1085 aa		4.58	□□□□□ -1.68
ABP140	YOR239W	MYO2	P19524	1574 aa	Known RBP	4.58	□□□□□ -1.68
ABP140	YOR239W	RTT106	P40161	455 aa		4.58	□□□□□ -1.68
ABP140	YOR239W	IRC20	Q06554	1556 aa		4.57	□□□□□ -1.68
ABP140	YOR239W	MLP2	P40457	1679 aa		4.57	□□□□□ -1.68
ABP140	YOR239W	NOT3	P06102	836 aa	Known RBP	4.57	□□□□□ -1.68
ABP140	YOR239W	SET1	P38827	1080 aa	Known RBP	4.57	□□□□□ -1.68
ABP140	YOR239W	EDE1	P34216	1381 aa		4.57	□□□□□ -1.68
ABP140	YOR239W	LEU3	P08638	886 aa		4.56	□□□□□ -1.68
ABP140	YOR239W	ABP1	P15891	592 aa	Known RBP	4.56	□□□□□ -1.68
ABP140	YOR239W	MSH4	P40965	878 aa	Predicted RBP	4.56	□□□□□ -1.68
ABP140	YOR239W	SMC4	Q12267	1418 aa		4.56	□□□□□ -1.68
ABP140	YOR239W	SIC1	P38634	284 aa		4.55	□□□□□ -1.68
ABP140	YOR239W	YPP1	P46951	817 aa		4.55	□□□□□ -1.68
ABP140	YOR239W	IOC4	Q04213	475 aa		4.55	□□□□□ -1.68
ABP140	YOR239W	STU1	P38198	1513 aa		4.54	□□□□□ -1.68
ABP140	YOR239W	BYE1	P36106	594 aa		4.54	□□□□□ -1.68
ABP140	YOR239W	RPN1	P38764	993 aa	Known RBP	4.54	□□□□□ -1.68
ABP140	YOR239W	BPT1	P14772	1559 aa		4.54	□□□□□ -1.68
ABP140	YOR239W	EAP1	P36041	632 aa	Known RBP	4.54	□□□□□ -1.68
ABP140	YOR239W	EDS1	P38073	919 aa		4.54	□□□□□ -1.68
ABP140	YOR239W	MSH3	P25336	1018 aa		4.53	□□□□□ -1.68
ABP140	YOR239W	CHZ1	P40019	153 aa	Predicted RBP	4.53	□□□□□ -1.68
ABP140	YOR239W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms