RNA–Protein interactions for RNA: YMR298W

LIP1, Transcript of Ceramide synthase subunit, yeastyeast

Gene LIP1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LIP1YMR298W TRM732Q03496 1420 aa14.15□□□□□ -0.14
LIP1YMR298W PDR15Q04182 1529 aaKnown RBP14.14□□□□□ -0.15
LIP1YMR298W TY1B-JR2P47100 1755 aaKnown RBP14.14□□□□□ -0.15
LIP1YMR298W TY1B-ER2Q03619 1755 aa14.14□□□□□ -0.15
LIP1YMR298W TY1B-MR1Q04214 1755 aa14.14□□□□□ -0.15
LIP1YMR298W TY1B-MR2Q04670 1755 aaKnown RBP14.14□□□□□ -0.15
LIP1YMR298W TY1B-LR1Q12088 1755 aaKnown RBP14.14□□□□□ -0.15
LIP1YMR298W TY1B-NL1Q12112 1755 aa14.14□□□□□ -0.15
LIP1YMR298W TY1B-GR1Q12141 1755 aa14.14□□□□□ -0.15
LIP1YMR298W TY1B-BLQ12490 1755 aa14.14□□□□□ -0.15
LIP1YMR298W DNF1P32660 1571 aa14.13□□□□□ -0.15
LIP1YMR298W RPA190P10964 1664 aaKnown RBP14.12□□□□□ -0.15
LIP1YMR298W HAA1Q12753 694 aaKnown RBP14.12□□□□□ -0.15
LIP1YMR298W SNT2P53127 1403 aa14.11□□□□□ -0.15
LIP1YMR298W ULS1Q08562 1619 aa14.1□□□□□ -0.15
LIP1YMR298W GEA1P47102 1408 aaPredicted RBP14.04□□□□□ -0.16
LIP1YMR298W NTE1Q04958 1679 aa14.04□□□□□ -0.16
LIP1YMR298W IFH1P39520 1085 aa14.03□□□□□ -0.16
LIP1YMR298W RPO21P04050 1733 aaKnown RBP14□□□□□ -0.17
LIP1YMR298W IKI3Q06706 1349 aaKnown RBP13.98□□□□□ -0.17
LIP1YMR298W GEA2P39993 1459 aaKnown RBP13.96□□□□□ -0.17
LIP1YMR298W NUP159P40477 1460 aa13.96□□□□□ -0.17
LIP1YMR298W RTT106P40161 455 aa13.96□□□□□ -0.17
LIP1YMR298W MET5P47169 1442 aa13.95□□□□□ -0.18
LIP1YMR298W RPL17AP05740 184 aaKnown RBP13.91□□□□□ -0.18
LIP1YMR298W RPL17BP46990 184 aaKnown RBP13.91□□□□□ -0.18
LIP1YMR298W IRC20Q06554 1556 aa13.89□□□□□ -0.19
LIP1YMR298W NUP170P38181 1502 aa13.88□□□□□ -0.19
LIP1YMR298W TY3B-GQ99315 1547 aa13.87□□□□□ -0.19
LIP1YMR298W VPS15P22219 1454 aa13.85□□□□□ -0.19
LIP1YMR298W CAT8P39113 1433 aa13.84□□□□□ -0.19
LIP1YMR298W REB1P21538 810 aa13.84□□□□□ -0.19
LIP1YMR298W YRF1-1P0CX20 1796 aa13.81□□□□□ -0.2
LIP1YMR298W YRF1-5P0CX21 1796 aa13.81□□□□□ -0.2
LIP1YMR298W YRF1-8P0CX22 1796 aa13.81□□□□□ -0.2
LIP1YMR298W MET10P39692 1035 aa13.81□□□□□ -0.2
LIP1YMR298W PDR12Q02785 1511 aa13.8□□□□□ -0.2
LIP1YMR298W YBT1P32386 1661 aa13.8□□□□□ -0.2
LIP1YMR298W MRPL32P25348 183 aa13.75□□□□□ -0.21
LIP1YMR298W SSM4P40318 1319 aa13.74□□□□□ -0.21
LIP1YMR298W SPO14P36126 1683 aa13.73□□□□□ -0.21
LIP1YMR298W GDB1Q06625 1536 aa13.73□□□□□ -0.21
LIP1YMR298W PDR10P51533 1564 aa13.71□□□□□ -0.21
LIP1YMR298W NUP157P40064 1391 aaKnown RBP13.69□□□□□ -0.22
LIP1YMR298W ARO1P08566 1588 aaKnown RBP13.64□□□□□ -0.23
LIP1YMR298W SRB8P25648 1427 aa13.63□□□□□ -0.23
LIP1YMR298W LTE1P07866 1435 aa13.62□□□□□ -0.23
LIP1YMR298W CKB1P43639 278 aa13.59□□□□□ -0.23
LIP1YMR298W IQG1Q12280 1495 aa13.57□□□□□ -0.24
LIP1YMR298W BUD3P25558 1636 aa13.56□□□□□ -0.24
LIP1YMR298W YSP2Q06681 1438 aa13.52□□□□□ -0.25
LIP1YMR298W MMS1Q06211 1407 aa13.5□□□□□ -0.25
LIP1YMR298W BUD21Q08492 214 aaPredicted RBP13.45□□□□□ -0.26
LIP1YMR298W DRS2P39524 1355 aa13.45□□□□□ -0.26
LIP1YMR298W SEC7P11075 2009 aaKnown RBP13.42□□□□□ -0.26
LIP1YMR298W TRM3Q07527 1436 aa13.41□□□□□ -0.26
LIP1YMR298W BNR1P40450 1375 aa13.4□□□□□ -0.26
LIP1YMR298W GCN2P15442 1659 aa13.4□□□□□ -0.26
LIP1YMR298W DOP1Q03921 1698 aa13.37□□□□□ -0.27
LIP1YMR298W BNI1P41832 1953 aa13.31□□□□□ -0.28
LIP1YMR298W CHC1P22137 1653 aaKnown RBP13.31□□□□□ -0.28
LIP1YMR298W ITT1Q04638 464 aa13.3□□□□□ -0.28
LIP1YMR298W SPT21P35209 758 aa13.26□□□□□ -0.29
LIP1YMR298W YOR093CQ12275 1648 aa13.22□□□□□ -0.29
LIP1YMR298W NOP7P53261 605 aaKnown RBP13.2□□□□□ -0.3
LIP1YMR298W PDR5P33302 1511 aaKnown RBP13.19□□□□□ -0.3
LIP1YMR298W PAF1P38351 445 aa13.19□□□□□ -0.3
LIP1YMR298W NUP188P52593 1655 aaKnown RBP13.13□□□□□ -0.31
LIP1YMR298W DNF2Q12675 1612 aa13.11□□□□□ -0.31
LIP1YMR298W VMR1P38735 1592 aa13.11□□□□□ -0.31
LIP1YMR298W YGL015CP33199 130 aa13.1□□□□□ -0.31
LIP1YMR298W YKR023WP36119 530 aaKnown RBP13.1□□□□□ -0.31
LIP1YMR298W CDC27P38042 758 aa13.1□□□□□ -0.31
LIP1YMR298W POL5P39985 1022 aaKnown RBP13.08□□□□□ -0.32
LIP1YMR298W URN1Q06525 465 aaKnown RBP13.08□□□□□ -0.32
LIP1YMR298W IML1P47170 1584 aa13.07□□□□□ -0.32
LIP1YMR298W RAV1P47104 1357 aa13.07□□□□□ -0.32
LIP1YMR298W PDR11P40550 1411 aa13.05□□□□□ -0.32
LIP1YMR298W RTC1Q08281 1341 aa13.02□□□□□ -0.33
LIP1YMR298W IPL1P38991 367 aa12.99□□□□□ -0.33
LIP1YMR298W YAP3P38749 330 aa12.97□□□□□ -0.33
LIP1YMR298W TYS1P36421 394 aaKnown RBP12.93□□□□□ -0.34
LIP1YMR298W HAP1P0CE41 1502 aa12.89□□□□□ -0.35
LIP1YMR298W HOP09932 586 aa12.89□□□□□ -0.35
LIP1YMR298W TY3B-IQ7LHG5 1498 aaKnown RBP12.89□□□□□ -0.35
LIP1YMR298W ESL2P36168 1195 aa12.88□□□□□ -0.35
LIP1YMR298W TAF5P38129 798 aa12.86□□□□□ -0.35
LIP1YMR298W RIM101P33400 625 aa12.85□□□□□ -0.35
LIP1YMR298W NUP192P47054 1683 aa12.85□□□□□ -0.35
LIP1YMR298W DCD1P06773 312 aa12.84□□□□□ -0.35
LIP1YMR298W TFC8Q12308 588 aa12.83□□□□□ -0.36
LIP1YMR298W DNF3Q12674 1656 aa12.83□□□□□ -0.36
LIP1YMR298W ABP1P15891 592 aaKnown RBP12.8□□□□□ -0.36
LIP1YMR298W SEC3P33332 1336 aaKnown RBP12.8□□□□□ -0.36
LIP1YMR298W MHP1P43638 1398 aa12.8□□□□□ -0.36
LIP1YMR298W ORC1P54784 914 aaPredicted RBP12.79□□□□□ -0.36
LIP1YMR298W SCT1P32784 759 aa12.77□□□□□ -0.37
LIP1YMR298W ALD4P46367 519 aaKnown RBP12.76□□□□□ -0.37
LIP1YMR298W KIP3P53086 805 aaKnown RBP12.76□□□□□ -0.37
LIP1YMR298W YLR419WQ06698 1435 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms