RNA–Protein interactions for RNA: YMR296C

LCB1, Transcript of Component of serine palmitoyltransferase, yeastyeast

Gene LCB1, Length 1,677 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB1YMR296C YRF1-5P0CX21 1796 aa17.86■□□□□ 0.45
LCB1YMR296C YRF1-8P0CX22 1796 aa17.86■□□□□ 0.45
LCB1YMR296C RPO21P04050 1733 aaKnown RBP17.82■□□□□ 0.44
LCB1YMR296C SNQ2P32568 1501 aaKnown RBP17.76■□□□□ 0.43
LCB1YMR296C GEA2P39993 1459 aaKnown RBP17.74■□□□□ 0.43
LCB1YMR296C VPS15P22219 1454 aa17.72■□□□□ 0.43
LCB1YMR296C BNI1P41832 1953 aa17.72■□□□□ 0.43
LCB1YMR296C SNT2P53127 1403 aa17.69■□□□□ 0.42
LCB1YMR296C STH1P32597 1359 aa17.66■□□□□ 0.42
LCB1YMR296C ITT1Q04638 464 aa17.61■□□□□ 0.41
LCB1YMR296C ULS1Q08562 1619 aa17.55■□□□□ 0.4
LCB1YMR296C MLP2P40457 1679 aa17.54■□□□□ 0.4
LCB1YMR296C DRS2P39524 1355 aa17.5■□□□□ 0.39
LCB1YMR296C SAS10Q12136 610 aaPredicted RBP17.5■□□□□ 0.39
LCB1YMR296C MET10P39692 1035 aa17.48■□□□□ 0.39
LCB1YMR296C PDR15Q04182 1529 aaKnown RBP17.48■□□□□ 0.39
LCB1YMR296C SPO14P36126 1683 aa17.48■□□□□ 0.39
LCB1YMR296C RTT106P40161 455 aa17.46■□□□□ 0.39
LCB1YMR296C PDR12Q02785 1511 aa17.45■□□□□ 0.38
LCB1YMR296C MMS1Q06211 1407 aa17.41■□□□□ 0.38
LCB1YMR296C NUP170P38181 1502 aa17.39■□□□□ 0.37
LCB1YMR296C IRC20Q06554 1556 aa17.39■□□□□ 0.37
LCB1YMR296C GDB1Q06625 1536 aa17.36■□□□□ 0.37
LCB1YMR296C TAF7Q05021 590 aa17.34■□□□□ 0.37
LCB1YMR296C NUP157P40064 1391 aaKnown RBP17.29■□□□□ 0.36
LCB1YMR296C IQG1Q12280 1495 aa17.25■□□□□ 0.35
LCB1YMR296C IFH1P39520 1085 aa17.24■□□□□ 0.35
LCB1YMR296C PDR10P51533 1564 aa17.22■□□□□ 0.35
LCB1YMR296C GEA1P47102 1408 aaPredicted RBP17.2■□□□□ 0.34
LCB1YMR296C ABP1P15891 592 aaKnown RBP17.18■□□□□ 0.34
LCB1YMR296C MIF2P35201 549 aa17.18■□□□□ 0.34
LCB1YMR296C DNF2Q12675 1612 aa17.18■□□□□ 0.34
LCB1YMR296C DOP1Q03921 1698 aa17.16■□□□□ 0.34
LCB1YMR296C TY3B-GQ99315 1547 aa17.16■□□□□ 0.34
LCB1YMR296C BUD3P25558 1636 aa17.13■□□□□ 0.33
LCB1YMR296C TRM3Q07527 1436 aa17.13■□□□□ 0.33
LCB1YMR296C YBT1P32386 1661 aa17.11■□□□□ 0.33
LCB1YMR296C CAT8P39113 1433 aa17.1■□□□□ 0.33
LCB1YMR296C ARO1P08566 1588 aaKnown RBP17■□□□□ 0.31
LCB1YMR296C CHC1P22137 1653 aaKnown RBP16.97■□□□□ 0.31
LCB1YMR296C YSP2Q06681 1438 aa16.92■□□□□ 0.3
LCB1YMR296C SEC7P11075 2009 aaKnown RBP16.92■□□□□ 0.3
LCB1YMR296C CKB1P43639 278 aa16.89■□□□□ 0.29
LCB1YMR296C YOR093CQ12275 1648 aa16.8■□□□□ 0.28
LCB1YMR296C BNR1P40450 1375 aa16.8■□□□□ 0.28
LCB1YMR296C SRB8P25648 1427 aa16.73■□□□□ 0.27
LCB1YMR296C YFR006WP43590 535 aa16.66■□□□□ 0.26
LCB1YMR296C DNF3Q12674 1656 aa16.64■□□□□ 0.25
LCB1YMR296C YAP3P38749 330 aa16.59■□□□□ 0.25
LCB1YMR296C IKI3Q06706 1349 aaKnown RBP16.59■□□□□ 0.25
LCB1YMR296C BUD21Q08492 214 aaPredicted RBP16.54■□□□□ 0.24
LCB1YMR296C URN1Q06525 465 aaKnown RBP16.47■□□□□ 0.23
LCB1YMR296C SSM4P40318 1319 aa16.47■□□□□ 0.23
LCB1YMR296C NUP188P52593 1655 aaKnown RBP16.44■□□□□ 0.22
LCB1YMR296C VMR1P38735 1592 aa16.4■□□□□ 0.22
LCB1YMR296C MAK10Q02197 733 aa16.38■□□□□ 0.21
LCB1YMR296C IPL1P38991 367 aa16.37■□□□□ 0.21
LCB1YMR296C TYS1P36421 394 aaKnown RBP16.31■□□□□ 0.2
LCB1YMR296C IML1P47170 1584 aa16.31■□□□□ 0.2
LCB1YMR296C HAP1P0CE41 1502 aa16.3■□□□□ 0.2
LCB1YMR296C PDR5P33302 1511 aaKnown RBP16.25■□□□□ 0.19
LCB1YMR296C GCN2P15442 1659 aa16.25■□□□□ 0.19
LCB1YMR296C USO1P25386 1790 aa16.24■□□□□ 0.19
LCB1YMR296C PDR11P40550 1411 aa16.18■□□□□ 0.18
LCB1YMR296C TY1B-NL2Q99337 1749 aaKnown RBP16.09■□□□□ 0.17
LCB1YMR296C YMR196WQ04336 1088 aa16■□□□□ 0.15
LCB1YMR296C THI12P42883 340 aa15.98■□□□□ 0.15
LCB1YMR296C THI5P43534 340 aa15.98■□□□□ 0.15
LCB1YMR296C THI11P47183 340 aa15.98■□□□□ 0.15
LCB1YMR296C THI13Q07748 340 aa15.98■□□□□ 0.15
LCB1YMR296C RAV1P47104 1357 aa15.97■□□□□ 0.15
LCB1YMR296C PAF1P38351 445 aa15.92■□□□□ 0.14
LCB1YMR296C KRE5P22023 1365 aa15.9■□□□□ 0.14
LCB1YMR296C CFT1Q06632 1357 aaKnown RBP15.87■□□□□ 0.13
LCB1YMR296C BCK1Q01389 1478 aa15.86■□□□□ 0.13
LCB1YMR296C BFR2Q06631 534 aaKnown RBP15.86■□□□□ 0.13
LCB1YMR296C NUP192P47054 1683 aa15.86■□□□□ 0.13
LCB1YMR296C RTC1Q08281 1341 aa15.86■□□□□ 0.13
LCB1YMR296C RIA1P53893 1110 aa15.83■□□□□ 0.12
LCB1YMR296C MRX12P47084 519 aa15.82■□□□□ 0.12
LCB1YMR296C NOP7P53261 605 aaKnown RBP15.79■□□□□ 0.12
LCB1YMR296C RAD9P14737 1309 aa15.78■□□□□ 0.12
LCB1YMR296C ALD4P46367 519 aaKnown RBP15.76■□□□□ 0.11
LCB1YMR296C CAB1Q04430 367 aa15.76■□□□□ 0.11
LCB1YMR296C YNR029CP53729 429 aaKnown RBP15.74■□□□□ 0.11
LCB1YMR296C POL5P39985 1022 aaKnown RBP15.61■□□□□ 0.09
LCB1YMR296C TY3B-IQ7LHG5 1498 aaKnown RBP15.59■□□□□ 0.09
LCB1YMR296C ESL2P36168 1195 aa15.58■□□□□ 0.08
LCB1YMR296C TAF5P38129 798 aa15.58■□□□□ 0.08
LCB1YMR296C PTP3P40048 928 aa15.58■□□□□ 0.08
LCB1YMR296C TAF8Q03750 510 aa15.54■□□□□ 0.08
LCB1YMR296C YAH1Q12184 172 aaKnown RBP15.52■□□□□ 0.08
LCB1YMR296C NSR1P27476 414 aaKnown RBP RIP-Chip data15.51■□□□□ 0.07not detected
LCB1YMR296C NAP1P25293 417 aaKnown RBP15.49■□□□□ 0.07
LCB1YMR296C APP1P53933 587 aa15.46■□□□□ 0.07
LCB1YMR296C RCM1P53972 490 aa15.43■□□□□ 0.06
LCB1YMR296C CPS1P27614 576 aa15.42■□□□□ 0.06
LCB1YMR296C PPH3P32345 308 aa15.38■□□□□ 0.05
LCB1YMR296C KIP3P53086 805 aaKnown RBP15.38■□□□□ 0.05
LCB1YMR296C SPE2P21182 396 aa15.38■□□□□ 0.05
Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms