RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C MAK21Q12176 1025 aaKnown RBP7.57□□□□□ -1.2
EAR1YMR171C UBP14P38237 781 aaKnown RBP7.57□□□□□ -1.2
EAR1YMR171C SET4P42948 560 aa7.56□□□□□ -1.2
EAR1YMR171C SOL3P38858 249 aa7.55□□□□□ -1.2
EAR1YMR171C YGR273CP53329 174 aa7.55□□□□□ -1.2
EAR1YMR171C NUP42P49686 430 aaKnown RBP7.54□□□□□ -1.2
EAR1YMR171C YNR021WP53723 404 aaKnown RBP7.54□□□□□ -1.2
EAR1YMR171C YDR090CQ03193 310 aa7.54□□□□□ -1.2
EAR1YMR171C YLR326WQ06170 240 aaKnown RBP7.54□□□□□ -1.2
EAR1YMR171C DCW1P36091 449 aa7.54□□□□□ -1.2
EAR1YMR171C ABP1P15891 592 aaKnown RBP7.52□□□□□ -1.21
EAR1YMR171C DIT2P21595 489 aa7.51□□□□□ -1.21
EAR1YMR171C WSC3Q12215 556 aa7.51□□□□□ -1.21
EAR1YMR171C MSB4Q12317 492 aa7.51□□□□□ -1.21
EAR1YMR171C GLC3P32775 704 aa7.5□□□□□ -1.21
EAR1YMR171C NST1P53935 1240 aa7.5□□□□□ -1.21
EAR1YMR171C HTA1P04911 132 aaKnown RBP7.49□□□□□ -1.21
EAR1YMR171C HTA2P04912 132 aa7.49□□□□□ -1.21
EAR1YMR171C KEX1P09620 729 aa7.49□□□□□ -1.21
EAR1YMR171C KIN1P13185 1064 aa7.46□□□□□ -1.22
EAR1YMR171C RAD54P32863 898 aa7.46□□□□□ -1.22
EAR1YMR171C PCS60P38137 543 aaKnown RBP RIP-Chip data7.46□□□□□ -1.22not detected
EAR1YMR171C KIC1P38692 1080 aa7.46□□□□□ -1.22
EAR1YMR171C YBL029C-AQ3E756 94 aa7.46□□□□□ -1.22
EAR1YMR171C AIM7Q12156 149 aa7.45□□□□□ -1.22
EAR1YMR171C DMA2P53924 522 aa7.44□□□□□ -1.22
EAR1YMR171C SGS1P35187 1447 aa7.43□□□□□ -1.22
EAR1YMR171C ILV3P39522 585 aaKnown RBP7.43□□□□□ -1.22
EAR1YMR171C AI4P03878 556 aa7.42□□□□□ -1.22
EAR1YMR171C MPH3P0CE00 602 aa7.42□□□□□ -1.22
EAR1YMR171C VNX1P42839 908 aa7.42□□□□□ -1.22
EAR1YMR171C EAP1P36041 632 aaKnown RBP7.41□□□□□ -1.22
EAR1YMR171C YEL023CP39992 682 aa7.41□□□□□ -1.22
EAR1YMR171C TRP5P00931 707 aaKnown RBP7.4□□□□□ -1.23
EAR1YMR171C ATF2P53296 535 aa7.39□□□□□ -1.23
EAR1YMR171C TIF11P38912 153 aaKnown RBP7.38□□□□□ -1.23
EAR1YMR171C UBP9P39967 754 aa7.37□□□□□ -1.23
EAR1YMR171C PSE1P32337 1089 aaKnown RBP7.36□□□□□ -1.23
EAR1YMR171C ORC6P38826 435 aa7.36□□□□□ -1.23
EAR1YMR171C ULI1P43604 169 aa7.36□□□□□ -1.23
EAR1YMR171C DAN4P47179 1161 aa7.36□□□□□ -1.23
EAR1YMR171C PTC4P38089 393 aa7.35□□□□□ -1.23
EAR1YMR171C SPP1Q03012 353 aa7.35□□□□□ -1.23
EAR1YMR171C SPA2P23201 1466 aaKnown RBP7.35□□□□□ -1.23
EAR1YMR171C SLI15P38283 698 aa7.35□□□□□ -1.23
EAR1YMR171C JIP4Q03361 876 aa7.33□□□□□ -1.24
EAR1YMR171C IOC2Q12072 812 aa7.32□□□□□ -1.24
EAR1YMR171C GUA1P38625 525 aaKnown RBP7.32□□□□□ -1.24
EAR1YMR171C RGR1P19263 1082 aa7.28□□□□□ -1.24
EAR1YMR171C GAP1P19145 602 aaPredicted RBP7.28□□□□□ -1.24
EAR1YMR171C MVP1P40959 511 aaKnown RBP7.27□□□□□ -1.25
EAR1YMR171C YNL035CP53962 389 aaKnown RBP7.27□□□□□ -1.25
EAR1YMR171C CDC73Q06697 393 aa7.27□□□□□ -1.25
EAR1YMR171C TEA1P47988 759 aa7.25□□□□□ -1.25
EAR1YMR171C LDB19Q12502 818 aa7.25□□□□□ -1.25
EAR1YMR171C DNA2P38859 1522 aa7.25□□□□□ -1.25
EAR1YMR171C RPP1BP10622 106 aaKnown RBP7.25□□□□□ -1.25
EAR1YMR171C CSC1Q06538 782 aa7.25□□□□□ -1.25
EAR1YMR171C MID1P41821 548 aa7.24□□□□□ -1.25
EAR1YMR171C PML39Q03760 334 aa7.24□□□□□ -1.25
EAR1YMR171C RTG1P32607 177 aa7.23□□□□□ -1.25
EAR1YMR171C SSN2P38931 1420 aa7.22□□□□□ -1.25
EAR1YMR171C CLB5P30283 435 aa7.22□□□□□ -1.25
EAR1YMR171C HPC2Q01448 625 aa7.22□□□□□ -1.25
EAR1YMR171C SEC61P32915 480 aa7.21□□□□□ -1.26
EAR1YMR171C HGH1P48362 394 aaKnown RBP7.21□□□□□ -1.26
EAR1YMR171C CSN12P47130 423 aa7.2□□□□□ -1.26
EAR1YMR171C YPR109WQ06104 294 aa7.2□□□□□ -1.26
EAR1YMR171C DPL1Q05567 589 aa7.19□□□□□ -1.26
EAR1YMR171C MPC54Q08550 464 aa7.19□□□□□ -1.26
EAR1YMR171C TFB4Q12004 338 aa7.19□□□□□ -1.26
EAR1YMR171C BUD31P25337 157 aaPredicted RBP7.18□□□□□ -1.26
EAR1YMR171C PEX21P50091 288 aa7.18□□□□□ -1.26
EAR1YMR171C TFB3Q03290 321 aa7.18□□□□□ -1.26
EAR1YMR171C SSA2P10592 639 aaKnown RBP7.17□□□□□ -1.26
EAR1YMR171C NIS1P53939 407 aa7.17□□□□□ -1.26
EAR1YMR171C KTR1P27810 393 aaKnown RBP7.16□□□□□ -1.26
EAR1YMR171C TUM1Q08686 304 aaKnown RBP7.16□□□□□ -1.26
EAR1YMR171C PEX29Q03370 554 aa7.16□□□□□ -1.26
EAR1YMR171C NCR1Q12200 1170 aa7.16□□□□□ -1.26
EAR1YMR171C TYW1Q08960 810 aaKnown RBP7.15□□□□□ -1.27
EAR1YMR171C RLF2Q12495 606 aa7.15□□□□□ -1.27
EAR1YMR171C KOG1P38873 1557 aa7.14□□□□□ -1.27
EAR1YMR171C TFG1P41895 735 aaPredicted RBP7.14□□□□□ -1.27
EAR1YMR171C FPK1P53739 893 aa7.14□□□□□ -1.27
EAR1YMR171C BRL1P38770 471 aa7.13□□□□□ -1.27
EAR1YMR171C YDL129WQ07555 291 aa7.13□□□□□ -1.27
EAR1YMR171C NMA111P53920 997 aa7.12□□□□□ -1.27
EAR1YMR171C YMR196WQ04336 1088 aa7.12□□□□□ -1.27
EAR1YMR171C ISU2Q12056 156 aa7.12□□□□□ -1.27
EAR1YMR171C YRR1Q12172 810 aa7.12□□□□□ -1.27
EAR1YMR171C PKC1P24583 1151 aa7.12□□□□□ -1.27
EAR1YMR171C HST2P53686 357 aa7.12□□□□□ -1.27
EAR1YMR171C SWR1Q05471 1514 aa7.12□□□□□ -1.27
EAR1YMR171C FKH1P40466 484 aa7.11□□□□□ -1.27
EAR1YMR171C TCB3Q03640 1545 aaKnown RBP7.11□□□□□ -1.27
EAR1YMR171C GLN1P32288 370 aaKnown RBP7.1□□□□□ -1.27
EAR1YMR171C SIT4P20604 311 aa7.09□□□□□ -1.27
EAR1YMR171C SCJ1P25303 377 aa7.09□□□□□ -1.27
EAR1YMR171C MMP1Q12372 583 aa7.09□□□□□ -1.27
Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms