RNA–Protein interactions for RNA: YLR417W

VPS36, Transcript of Component of the ESCRT-II complex, yeastyeast

Gene VPS36, Length 1,701 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS36YLR417W ATF2P53296 535 aa8.5□□□□□ -1.05
VPS36YLR417W ATH1P48016 1211 aa8.49□□□□□ -1.05
VPS36YLR417W GRE2Q12068 342 aaKnown RBP8.49□□□□□ -1.05
VPS36YLR417W GUT1P32190 709 aa8.48□□□□□ -1.05
VPS36YLR417W UBP14P38237 781 aaKnown RBP8.47□□□□□ -1.05
VPS36YLR417W VHR2P40041 505 aa8.46□□□□□ -1.05
VPS36YLR417W YDR090CQ03193 310 aa8.46□□□□□ -1.05
VPS36YLR417W GUA1P38625 525 aaKnown RBP8.45□□□□□ -1.06
VPS36YLR417W SAM3Q08986 587 aa8.44□□□□□ -1.06
VPS36YLR417W YLR326WQ06170 240 aaKnown RBP8.43□□□□□ -1.06
VPS36YLR417W YGR273CP53329 174 aa8.41□□□□□ -1.06
VPS36YLR417W HPC2Q01448 625 aa8.41□□□□□ -1.06
VPS36YLR417W KIC1P38692 1080 aa8.4□□□□□ -1.06
VPS36YLR417W GYP5Q12344 894 aa8.38□□□□□ -1.07
VPS36YLR417W MST1P07236 462 aa8.37□□□□□ -1.07
VPS36YLR417W PSE1P32337 1089 aaKnown RBP8.37□□□□□ -1.07
VPS36YLR417W RAD54P32863 898 aa8.36□□□□□ -1.07
VPS36YLR417W KEX1P09620 729 aa8.35□□□□□ -1.07
VPS36YLR417W SOL3P38858 249 aa8.34□□□□□ -1.07
VPS36YLR417W PCS60P38137 543 aaKnown RBP RIP-Chip data8.34□□□□□ -1.07 RIP-Chip
VPS36YLR417W GTT3P39996 337 aa8.32□□□□□ -1.08
VPS36YLR417W TFB3Q03290 321 aa8.31□□□□□ -1.08
VPS36YLR417W SSA2P10592 639 aaKnown RBP8.3□□□□□ -1.08
VPS36YLR417W BRL1P38770 471 aa8.29□□□□□ -1.08
VPS36YLR417W NST1P53935 1240 aa8.29□□□□□ -1.08
VPS36YLR417W DCW1P36091 449 aa8.27□□□□□ -1.09
VPS36YLR417W ORC6P38826 435 aa8.27□□□□□ -1.09
VPS36YLR417W CSN12P47130 423 aa8.27□□□□□ -1.09
VPS36YLR417W YOL036WQ08206 761 aa8.26□□□□□ -1.09
VPS36YLR417W TEA1P47988 759 aa8.25□□□□□ -1.09
VPS36YLR417W AI4P03878 556 aa8.23□□□□□ -1.09
VPS36YLR417W HTA1P04911 132 aaKnown RBP8.23□□□□□ -1.09
VPS36YLR417W HTA2P04912 132 aa8.23□□□□□ -1.09
VPS36YLR417W MPH3P0CE00 602 aa8.23□□□□□ -1.09
VPS36YLR417W SET4P42948 560 aa8.21□□□□□ -1.09
VPS36YLR417W RGR1P19263 1082 aa8.2□□□□□ -1.1
VPS36YLR417W PKC1P24583 1151 aa8.2□□□□□ -1.1
VPS36YLR417W CLB5P30283 435 aa8.2□□□□□ -1.1
VPS36YLR417W MSB4Q12317 492 aa8.2□□□□□ -1.1
VPS36YLR417W MVP1P40959 511 aaKnown RBP8.17□□□□□ -1.1
VPS36YLR417W ILV3P39522 585 aaKnown RBP8.17□□□□□ -1.1
VPS36YLR417W RPP1BP10622 106 aaKnown RBP8.16□□□□□ -1.1
VPS36YLR417W GAP1P19145 602 aaPredicted RBP8.15□□□□□ -1.1
VPS36YLR417W KTR1P27810 393 aaKnown RBP8.15□□□□□ -1.1
VPS36YLR417W CSC1Q06538 782 aa8.15□□□□□ -1.1
VPS36YLR417W DAN4P47179 1161 aa8.15□□□□□ -1.11
VPS36YLR417W BIM1P40013 344 aa8.14□□□□□ -1.11
VPS36YLR417W SLI15P38283 698 aa8.13□□□□□ -1.11
VPS36YLR417W YEL023CP39992 682 aa8.13□□□□□ -1.11
VPS36YLR417W YJL007CP47080 104 aa8.13□□□□□ -1.11
VPS36YLR417W TYW1Q08960 810 aaKnown RBP8.12□□□□□ -1.11
VPS36YLR417W GLN1P32288 370 aaKnown RBP8.11□□□□□ -1.11
VPS36YLR417W EAP1P36041 632 aaKnown RBP8.11□□□□□ -1.11
VPS36YLR417W HST2P53686 357 aa8.11□□□□□ -1.11
VPS36YLR417W PTC4P38089 393 aa8.1□□□□□ -1.11
VPS36YLR417W NIS1P53939 407 aa8.1□□□□□ -1.11
VPS36YLR417W FPK1P53739 893 aa8.09□□□□□ -1.11
VPS36YLR417W YPR109WQ06104 294 aa8.09□□□□□ -1.11
VPS36YLR417W ATG32P40458 529 aa8.09□□□□□ -1.11
VPS36YLR417W YMR196WQ04336 1088 aa8.09□□□□□ -1.11
VPS36YLR417W TFB4Q12004 338 aa8.09□□□□□ -1.11
VPS36YLR417W YBL036CP38197 257 aa8.07□□□□□ -1.12
VPS36YLR417W WSC3Q12215 556 aa8.07□□□□□ -1.12
VPS36YLR417W RPL34BP40525 121 aaKnown RBP8.06□□□□□ -1.12
VPS36YLR417W MMP1Q12372 583 aa8.06□□□□□ -1.12
VPS36YLR417W CDC73Q06697 393 aa8.06□□□□□ -1.12
VPS36YLR417W SUB2Q07478 446 aaKnown RBP8.06□□□□□ -1.12
VPS36YLR417W SSA1P10591 642 aaKnown RBP8.05□□□□□ -1.12
VPS36YLR417W JIP4Q03361 876 aa8.05□□□□□ -1.12
VPS36YLR417W TRP5P00931 707 aaKnown RBP8.04□□□□□ -1.12
VPS36YLR417W SIT4P20604 311 aa8.04□□□□□ -1.12
VPS36YLR417W CSE4P36012 229 aa8.04□□□□□ -1.12
VPS36YLR417W PEX21P50091 288 aa8.04□□□□□ -1.12
VPS36YLR417W TIF1P10081 395 aaKnown RBP8.03□□□□□ -1.12
VPS36YLR417W RAD59Q12223 238 aa8.03□□□□□ -1.12
VPS36YLR417W PKH3Q03306 898 aaPredicted RBP8.02□□□□□ -1.13
VPS36YLR417W SSA4P22202 642 aaKnown RBP8.01□□□□□ -1.13
VPS36YLR417W ESS1P22696 170 aa8.01□□□□□ -1.13
VPS36YLR417W SCJ1P25303 377 aa8□□□□□ -1.13
VPS36YLR417W GEF1P37020 779 aa8□□□□□ -1.13
VPS36YLR417W TUM1Q08686 304 aaKnown RBP8□□□□□ -1.13
VPS36YLR417W BIO2P32451 375 aa7.99□□□□□ -1.13
VPS36YLR417W VNX1P42839 908 aa7.98□□□□□ -1.13
VPS36YLR417W DPL1Q05567 589 aa7.98□□□□□ -1.13
VPS36YLR417W ERG12P07277 443 aa7.97□□□□□ -1.13
VPS36YLR417W YJU3P28321 313 aa7.97□□□□□ -1.13
VPS36YLR417W ULI1P43604 169 aa7.97□□□□□ -1.13
VPS36YLR417W ARG8P18544 423 aa7.96□□□□□ -1.14
VPS36YLR417W RTG2P32608 588 aaKnown RBP7.96□□□□□ -1.14
VPS36YLR417W TIF11P38912 153 aaKnown RBP7.96□□□□□ -1.14
VPS36YLR417W YBL029C-AQ3E756 94 aa7.95□□□□□ -1.14
VPS36YLR417W YNL108CP53929 270 aa7.95□□□□□ -1.14
VPS36YLR417W YPR204WQ08995 1032 aa7.95□□□□□ -1.14
VPS36YLR417W SUP45P12385 437 aaKnown RBP7.94□□□□□ -1.14
VPS36YLR417W TTI1P36097 1038 aa7.94□□□□□ -1.14
VPS36YLR417W RTF1P53064 558 aa7.94□□□□□ -1.14
VPS36YLR417W SPT5P27692 1063 aaKnown RBP7.93□□□□□ -1.14
VPS36YLR417W RSC30P38781 883 aa7.93□□□□□ -1.14
VPS36YLR417W MPC54Q08550 464 aa7.93□□□□□ -1.14
VPS36YLR417W YRR1Q12172 810 aa7.93□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 7.3 ms