RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W SSP1P38871 571 aa5.73□□□□□ -1.49
LCB5YLR260W TFC8Q12308 588 aa5.73□□□□□ -1.49
LCB5YLR260W RPA190P10964 1664 aaKnown RBP5.72□□□□□ -1.49
LCB5YLR260W HOP09932 586 aa5.72□□□□□ -1.49
LCB5YLR260W CDC27P38042 758 aa5.71□□□□□ -1.49
LCB5YLR260W YAH1Q12184 172 aaKnown RBP5.71□□□□□ -1.5
LCB5YLR260W RKR1Q04781 1562 aa5.71□□□□□ -1.5
LCB5YLR260W DCD1P06773 312 aa5.69□□□□□ -1.5
LCB5YLR260W YIL055CP40523 627 aaKnown RBP5.69□□□□□ -1.5
LCB5YLR260W TOP2P06786 1428 aaKnown RBP5.68□□□□□ -1.5
LCB5YLR260W PAN1P32521 1480 aa5.68□□□□□ -1.5
LCB5YLR260W POL1P13382 1468 aa5.67□□□□□ -1.5
LCB5YLR260W YLR271WQ06152 274 aa5.66□□□□□ -1.5
LCB5YLR260W MET5P47169 1442 aa5.65□□□□□ -1.5
LCB5YLR260W TY1B-JR2P47100 1755 aaKnown RBP5.64□□□□□ -1.51
LCB5YLR260W TY1B-ER2Q03619 1755 aa5.64□□□□□ -1.51
LCB5YLR260W TY1B-MR1Q04214 1755 aa5.64□□□□□ -1.51
LCB5YLR260W TY1B-MR2Q04670 1755 aaKnown RBP5.64□□□□□ -1.51
LCB5YLR260W MMS22Q06164 1454 aa5.64□□□□□ -1.51
LCB5YLR260W TY1B-LR1Q12088 1755 aaKnown RBP5.64□□□□□ -1.51
LCB5YLR260W TY1B-NL1Q12112 1755 aa5.64□□□□□ -1.51
LCB5YLR260W TY1B-GR1Q12141 1755 aa5.64□□□□□ -1.51
LCB5YLR260W TY1B-BLQ12490 1755 aa5.64□□□□□ -1.51
LCB5YLR260W YRF1-1P0CX20 1796 aa5.63□□□□□ -1.51
LCB5YLR260W YRF1-5P0CX21 1796 aa5.63□□□□□ -1.51
LCB5YLR260W YRF1-8P0CX22 1796 aa5.63□□□□□ -1.51
LCB5YLR260W STU1P38198 1513 aa5.63□□□□□ -1.51
LCB5YLR260W BNI1P41832 1953 aa5.62□□□□□ -1.51
LCB5YLR260W YOR1P53049 1477 aa5.62□□□□□ -1.51
LCB5YLR260W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.62□□□□□ -1.51not detected
LCB5YLR260W RSM7P47150 247 aa5.62□□□□□ -1.51
LCB5YLR260W SMC4Q12267 1418 aa5.59□□□□□ -1.51
LCB5YLR260W NTE1Q04958 1679 aa5.58□□□□□ -1.52
LCB5YLR260W MAP2P38174 421 aaKnown RBP5.58□□□□□ -1.52
LCB5YLR260W LTE1P07866 1435 aa5.57□□□□□ -1.52
LCB5YLR260W SPP41P38904 1435 aa5.57□□□□□ -1.52
LCB5YLR260W RPO21P04050 1733 aaKnown RBP5.57□□□□□ -1.52
LCB5YLR260W BCH2P36122 765 aa5.57□□□□□ -1.52
LCB5YLR260W TRM732Q03496 1420 aa5.56□□□□□ -1.52
LCB5YLR260W VTH1P40438 1549 aa5.55□□□□□ -1.52
LCB5YLR260W VTH2P40890 1549 aa5.55□□□□□ -1.52
LCB5YLR260W NUP159P40477 1460 aa5.55□□□□□ -1.52
LCB5YLR260W MGA2P40578 1113 aa5.53□□□□□ -1.52
LCB5YLR260W TSC11P40061 1430 aa5.53□□□□□ -1.52
LCB5YLR260W AI2P03876 854 aa5.52□□□□□ -1.53
LCB5YLR260W UBP10P53874 792 aaPredicted RBP5.52□□□□□ -1.53
LCB5YLR260W GEA2P39993 1459 aaKnown RBP5.51□□□□□ -1.53
LCB5YLR260W VPS15P22219 1454 aa5.51□□□□□ -1.53
LCB5YLR260W PSD2P53037 1138 aaKnown RBP5.51□□□□□ -1.53
LCB5YLR260W ITT1Q04638 464 aa5.51□□□□□ -1.53
LCB5YLR260W SNQ2P32568 1501 aaKnown RBP5.5□□□□□ -1.53
LCB5YLR260W CST9Q06032 482 aa5.49□□□□□ -1.53
LCB5YLR260W YFR006WP43590 535 aa5.48□□□□□ -1.53
LCB5YLR260W MYO4P32492 1471 aa5.47□□□□□ -1.53
LCB5YLR260W EPS1P40557 701 aa5.47□□□□□ -1.53
LCB5YLR260W BBC1P47068 1157 aa5.47□□□□□ -1.53
LCB5YLR260W SPO14P36126 1683 aa5.46□□□□□ -1.54
LCB5YLR260W SCY1P53009 804 aa5.46□□□□□ -1.54
LCB5YLR260W IRC20Q06554 1556 aa5.45□□□□□ -1.54
LCB5YLR260W ULS1Q08562 1619 aa5.44□□□□□ -1.54
LCB5YLR260W SNT2P53127 1403 aa5.44□□□□□ -1.54
LCB5YLR260W MMS1Q06211 1407 aa5.44□□□□□ -1.54
LCB5YLR260W BDF1P35817 686 aa5.43□□□□□ -1.54
LCB5YLR260W DNF2Q12675 1612 aa5.42□□□□□ -1.54
LCB5YLR260W DRS2P39524 1355 aa5.42□□□□□ -1.54
LCB5YLR260W MLP2P40457 1679 aa5.42□□□□□ -1.54
LCB5YLR260W DOP1Q03921 1698 aa5.42□□□□□ -1.54
LCB5YLR260W YTA7P40340 1379 aa5.41□□□□□ -1.54
LCB5YLR260W NUP170P38181 1502 aa5.4□□□□□ -1.54
LCB5YLR260W UBP9P39967 754 aa5.39□□□□□ -1.55
LCB5YLR260W LEU3P08638 886 aa5.39□□□□□ -1.55
LCB5YLR260W PDR12Q02785 1511 aa5.38□□□□□ -1.55
LCB5YLR260W GDB1Q06625 1536 aa5.38□□□□□ -1.55
LCB5YLR260W PDR15Q04182 1529 aaKnown RBP5.37□□□□□ -1.55
LCB5YLR260W ABP1P15891 592 aaKnown RBP5.36□□□□□ -1.55
LCB5YLR260W MRM1P25270 412 aa5.36□□□□□ -1.55
LCB5YLR260W STH1P32597 1359 aa5.35□□□□□ -1.55
LCB5YLR260W SLX5P32828 619 aaKnown RBP5.34□□□□□ -1.55
LCB5YLR260W MET10P39692 1035 aa5.33□□□□□ -1.56
LCB5YLR260W DMA2P53924 522 aa5.33□□□□□ -1.56
LCB5YLR260W PDR10P51533 1564 aa5.33□□□□□ -1.56
LCB5YLR260W IQG1Q12280 1495 aa5.32□□□□□ -1.56
LCB5YLR260W NUP157P40064 1391 aaKnown RBP5.32□□□□□ -1.56
LCB5YLR260W RCR1P38212 213 aa5.31□□□□□ -1.56
LCB5YLR260W ARO1P08566 1588 aaKnown RBP5.31□□□□□ -1.56
LCB5YLR260W TY3B-GQ99315 1547 aa5.31□□□□□ -1.56
LCB5YLR260W YBT1P32386 1661 aa5.3□□□□□ -1.56
LCB5YLR260W CHC1P22137 1653 aaKnown RBP5.3□□□□□ -1.56
LCB5YLR260W RAM2P29703 316 aa5.3□□□□□ -1.56
LCB5YLR260W TIF4632P39936 914 aaKnown RBP5.29□□□□□ -1.56
LCB5YLR260W RTT106P40161 455 aa5.29□□□□□ -1.56
LCB5YLR260W BUD3P25558 1636 aa5.28□□□□□ -1.56
LCB5YLR260W NAP1P25293 417 aaKnown RBP5.28□□□□□ -1.56
LCB5YLR260W RTG3P38165 486 aa5.28□□□□□ -1.56
LCB5YLR260W TGL3P40308 642 aa5.28□□□□□ -1.56
LCB5YLR260W TRM3Q07527 1436 aa5.27□□□□□ -1.57
LCB5YLR260W IFH1P39520 1085 aa5.27□□□□□ -1.57
LCB5YLR260W SAS10Q12136 610 aaPredicted RBP5.27□□□□□ -1.57
LCB5YLR260W YOR093CQ12275 1648 aa5.27□□□□□ -1.57
LCB5YLR260W IOC4Q04213 475 aa5.26□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 26.8 ms