RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	PSE1	P32337	1089 aa	Known RBP	2.42	□□□□□ -2.02
SMC4	YLR086W	UBP14	P38237	781 aa	Known RBP	2.42	□□□□□ -2.02
SMC4	YLR086W	KIN1	P13185	1064 aa		2.42	□□□□□ -2.02
SMC4	YLR086W	HGH1	P48362	394 aa	Known RBP	2.42	□□□□□ -2.02
SMC4	YLR086W	GAP1	P19145	602 aa	Predicted RBP	2.41	□□□□□ -2.02
SMC4	YLR086W	YGR273C	P53329	174 aa		2.41	□□□□□ -2.02
SMC4	YLR086W	MSB4	Q12317	492 aa		2.4	□□□□□ -2.02
SMC4	YLR086W	AI4	P03878	556 aa		2.4	□□□□□ -2.03
SMC4	YLR086W	YLR326W	Q06170	240 aa	Known RBP	2.4	□□□□□ -2.03
SMC4	YLR086W	GRE2	Q12068	342 aa	Known RBP	2.4	□□□□□ -2.03
SMC4	YLR086W	MPH3	P0CE00	602 aa		2.39	□□□□□ -2.03
SMC4	YLR086W	DIT2	P21595	489 aa		2.39	□□□□□ -2.03
SMC4	YLR086W	SOL3	P38858	249 aa		2.39	□□□□□ -2.03
SMC4	YLR086W	IES2	P40154	320 aa		2.39	□□□□□ -2.03
SMC4	YLR086W	DMA2	P53924	522 aa		2.39	□□□□□ -2.03
SMC4	YLR086W	CLB5	P30283	435 aa		2.38	□□□□□ -2.03
SMC4	YLR086W	ORC6	P38826	435 aa		2.38	□□□□□ -2.03
SMC4	YLR086W	ATH1	P48016	1211 aa		2.38	□□□□□ -2.03
SMC4	YLR086W	KEX1	P09620	729 aa		2.37	□□□□□ -2.03
SMC4	YLR086W	WSC3	Q12215	556 aa		2.37	□□□□□ -2.03
SMC4	YLR086W	SSA2	P10592	639 aa	Known RBP	2.37	□□□□□ -2.03
SMC4	YLR086W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	2.37	□□□□□ -2.03	not detected
SMC4	YLR086W	GYP5	Q12344	894 aa		2.37	□□□□□ -2.03
SMC4	YLR086W	GLC3	P32775	704 aa		2.36	□□□□□ -2.03
SMC4	YLR086W	EAP1	P36041	632 aa	Known RBP	2.36	□□□□□ -2.03
SMC4	YLR086W	RAD54	P32863	898 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	CSC1	Q06538	782 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	GUA1	P38625	525 aa	Known RBP	2.35	□□□□□ -2.03
SMC4	YLR086W	ATF2	P53296	535 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	JIP4	Q03361	876 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	SIT4	P20604	311 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	CSE4	P36012	229 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	YOL036W	Q08206	761 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	TFB4	Q12004	338 aa		2.35	□□□□□ -2.03
SMC4	YLR086W	HTA1	P04911	132 aa	Known RBP	2.34	□□□□□ -2.03
SMC4	YLR086W	HTA2	P04912	132 aa		2.34	□□□□□ -2.03
SMC4	YLR086W	RGR1	P19263	1082 aa		2.34	□□□□□ -2.03
SMC4	YLR086W	RPP1B	P10622	106 aa	Known RBP	2.34	□□□□□ -2.04
SMC4	YLR086W	PTC4	P38089	393 aa		2.34	□□□□□ -2.04
SMC4	YLR086W	KIC1	P38692	1080 aa		2.34	□□□□□ -2.04
SMC4	YLR086W	VHR2	P40041	505 aa		2.34	□□□□□ -2.04
SMC4	YLR086W	HST2	P53686	357 aa		2.34	□□□□□ -2.04
SMC4	YLR086W	MVP1	P40959	511 aa	Known RBP	2.33	□□□□□ -2.04
SMC4	YLR086W	DAN4	P47179	1161 aa		2.33	□□□□□ -2.04
SMC4	YLR086W	RTF1	P53064	558 aa		2.33	□□□□□ -2.04
SMC4	YLR086W	SPT5	P27692	1063 aa	Known RBP	2.32	□□□□□ -2.04
SMC4	YLR086W	TEA1	P47988	759 aa		2.32	□□□□□ -2.04
SMC4	YLR086W	BRL1	P38770	471 aa		2.32	□□□□□ -2.04
SMC4	YLR086W	ILV3	P39522	585 aa	Known RBP	2.32	□□□□□ -2.04
SMC4	YLR086W	CSN12	P47130	423 aa		2.32	□□□□□ -2.04
SMC4	YLR086W	SLI15	P38283	698 aa		2.31	□□□□□ -2.04
SMC4	YLR086W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	2.31	□□□□□ -2.04	not detected
SMC4	YLR086W	SIS2	P36024	562 aa		2.31	□□□□□ -2.04
SMC4	YLR086W	GTT3	P39996	337 aa		2.31	□□□□□ -2.04
SMC4	YLR086W	TFB3	Q03290	321 aa		2.31	□□□□□ -2.04
SMC4	YLR086W	IOC2	Q12072	812 aa		2.31	□□□□□ -2.04
SMC4	YLR086W	RSC30	P38781	883 aa		2.31	□□□□□ -2.04
SMC4	YLR086W	SEC61	P32915	480 aa		2.3	□□□□□ -2.04
SMC4	YLR086W	YEL023C	P39992	682 aa		2.3	□□□□□ -2.04
SMC4	YLR086W	KTR1	P27810	393 aa	Known RBP	2.3	□□□□□ -2.04
SMC4	YLR086W	GLN1	P32288	370 aa	Known RBP	2.3	□□□□□ -2.04
SMC4	YLR086W	NAF1	P53919	492 aa	Known RBP	2.3	□□□□□ -2.04
SMC4	YLR086W	NOP8	Q08287	484 aa	Predicted RBP	2.3	□□□□□ -2.04
SMC4	YLR086W	TIF11	P38912	153 aa	Known RBP	2.29	□□□□□ -2.04
SMC4	YLR086W	VNX1	P42839	908 aa		2.29	□□□□□ -2.04
SMC4	YLR086W	SUP45	P12385	437 aa	Known RBP	2.29	□□□□□ -2.04
SMC4	YLR086W	DCW1	P36091	449 aa		2.29	□□□□□ -2.04
SMC4	YLR086W	YNL035C	P53962	389 aa	Known RBP	2.29	□□□□□ -2.04
SMC4	YLR086W	TRP5	P00931	707 aa	Known RBP	2.28	□□□□□ -2.04
SMC4	YLR086W	FPK1	P53739	893 aa		2.28	□□□□□ -2.04
SMC4	YLR086W	LAM6	Q08001	693 aa		2.28	□□□□□ -2.04
SMC4	YLR086W	NIS1	P53939	407 aa		2.28	□□□□□ -2.04
SMC4	YLR086W	DPL1	Q05567	589 aa		2.28	□□□□□ -2.04
SMC4	YLR086W	ISU2	Q12056	156 aa		2.28	□□□□□ -2.04
SMC4	YLR086W	MAK16	P10962	306 aa	Predicted RBP	2.27	□□□□□ -2.05
SMC4	YLR086W	TPD3	P31383	635 aa		2.27	□□□□□ -2.05
SMC4	YLR086W	SET4	P42948	560 aa		2.27	□□□□□ -2.05
SMC4	YLR086W	YNL115C	P53925	644 aa		2.27	□□□□□ -2.05
SMC4	YLR086W	YPR109W	Q06104	294 aa		2.27	□□□□□ -2.05
SMC4	YLR086W	SSA1	P10591	642 aa	Known RBP	2.27	□□□□□ -2.05
SMC4	YLR086W	SUB2	Q07478	446 aa	Known RBP	2.27	□□□□□ -2.05
SMC4	YLR086W	MMP1	Q12372	583 aa		2.27	□□□□□ -2.05
SMC4	YLR086W	MRX10	Q05648	414 aa		2.27	□□□□□ -2.05
SMC4	YLR086W	GEF1	P37020	779 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	UBP9	P39967	754 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	BIM1	P40013	344 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	YPP1	P46951	817 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	MRX12	P47084	519 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	PKC1	P24583	1151 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	RAD59	Q12223	238 aa		2.26	□□□□□ -2.05
SMC4	YLR086W	SSA4	P22202	642 aa	Known RBP	2.26	□□□□□ -2.05
SMC4	YLR086W	ULI1	P43604	169 aa		2.25	□□□□□ -2.05
SMC4	YLR086W	ITT1	Q04638	464 aa		2.25	□□□□□ -2.05
SMC4	YLR086W	UTP13	Q05946	817 aa	Known RBP	2.25	□□□□□ -2.05
SMC4	YLR086W	CDC73	Q06697	393 aa		2.25	□□□□□ -2.05
SMC4	YLR086W	MPC54	Q08550	464 aa		2.25	□□□□□ -2.05
SMC4	YLR086W	PEP12	P32854	288 aa		2.25	□□□□□ -2.05
SMC4	YLR086W	ARH1	P48360	493 aa		2.25	□□□□□ -2.05
SMC4	YLR086W	TIF1	P10081	395 aa	Known RBP	2.25	□□□□□ -2.05
SMC4	YLR086W	TTI1	P36097	1038 aa		2.25	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 35.1 ms