RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C MAM3Q12296 706 aa8.53□□□□□ -1.04
DEF1YKL054C PBS2P08018 668 aa8.52□□□□□ -1.05
DEF1YKL054C SSA1P10591 642 aaKnown RBP8.52□□□□□ -1.05
DEF1YKL054C GLC3P32775 704 aa8.52□□□□□ -1.05
DEF1YKL054C HGH1P48362 394 aaKnown RBP8.52□□□□□ -1.05
DEF1YKL054C SUB2Q07478 446 aaKnown RBP8.51□□□□□ -1.05
DEF1YKL054C NOP53Q12080 455 aaKnown RBP8.51□□□□□ -1.05
DEF1YKL054C GTT3P39996 337 aa8.48□□□□□ -1.05
DEF1YKL054C MRX12P47084 519 aa8.48□□□□□ -1.05
DEF1YKL054C YBL029C-AQ3E756 94 aa8.46□□□□□ -1.05
DEF1YKL054C YOL036WQ08206 761 aa8.45□□□□□ -1.06
DEF1YKL054C NUP42P49686 430 aaKnown RBP8.44□□□□□ -1.06
DEF1YKL054C WSC3Q12215 556 aa8.44□□□□□ -1.06
DEF1YKL054C DIT2P21595 489 aa8.42□□□□□ -1.06
DEF1YKL054C VNX1P42839 908 aa8.42□□□□□ -1.06
DEF1YKL054C SET4P42948 560 aa8.42□□□□□ -1.06
DEF1YKL054C HPC2Q01448 625 aa8.42□□□□□ -1.06
DEF1YKL054C URN1Q06525 465 aaKnown RBP8.41□□□□□ -1.06
DEF1YKL054C GYP5Q12344 894 aa8.41□□□□□ -1.06
DEF1YKL054C BUD31P25337 157 aaPredicted RBP8.4□□□□□ -1.06
DEF1YKL054C GRE2Q12068 342 aaKnown RBP8.4□□□□□ -1.06
DEF1YKL054C UBP9P39967 754 aa8.39□□□□□ -1.07
DEF1YKL054C NOP7P53261 605 aaKnown RBP8.39□□□□□ -1.07
DEF1YKL054C PAM1P37304 830 aaKnown RBP8.38□□□□□ -1.07
DEF1YKL054C GUT1P32190 709 aa8.38□□□□□ -1.07
DEF1YKL054C TFB3Q03290 321 aa8.38□□□□□ -1.07
DEF1YKL054C SOL3P38858 249 aa8.37□□□□□ -1.07
DEF1YKL054C MSB4Q12317 492 aa8.37□□□□□ -1.07
DEF1YKL054C ATH1P48016 1211 aa8.36□□□□□ -1.07
DEF1YKL054C TOP1P04786 769 aa8.35□□□□□ -1.07
DEF1YKL054C IES2P40154 320 aa8.35□□□□□ -1.07
DEF1YKL054C NST1P53935 1240 aa8.35□□□□□ -1.07
DEF1YKL054C DCW1P36091 449 aa8.33□□□□□ -1.08
DEF1YKL054C PKC1P24583 1151 aa8.32□□□□□ -1.08
DEF1YKL054C GLN1P32288 370 aaKnown RBP8.32□□□□□ -1.08
DEF1YKL054C SNU71P53207 620 aaKnown RBP8.32□□□□□ -1.08
DEF1YKL054C MAK21Q12176 1025 aaKnown RBP8.31□□□□□ -1.08
DEF1YKL054C TIF11P38912 153 aaKnown RBP8.3□□□□□ -1.08
DEF1YKL054C YGR273CP53329 174 aa8.29□□□□□ -1.08
DEF1YKL054C SPP1Q03012 353 aa8.29□□□□□ -1.08
DEF1YKL054C TRP5P00931 707 aaKnown RBP8.29□□□□□ -1.08
DEF1YKL054C UBP14P38237 781 aaKnown RBP8.29□□□□□ -1.08
DEF1YKL054C IOC2Q12072 812 aa8.29□□□□□ -1.08
DEF1YKL054C HTA1P04911 132 aaKnown RBP8.27□□□□□ -1.08
DEF1YKL054C HTA2P04912 132 aa8.27□□□□□ -1.08
DEF1YKL054C ULI1P43604 169 aa8.27□□□□□ -1.09
DEF1YKL054C SEN54Q02825 467 aaPredicted RBP8.27□□□□□ -1.09
DEF1YKL054C REF2P42073 533 aaPredicted RBP8.26□□□□□ -1.09
DEF1YKL054C EAP1P36041 632 aaKnown RBP8.26□□□□□ -1.09
DEF1YKL054C BIM1P40013 344 aa8.25□□□□□ -1.09
DEF1YKL054C RRN6P32786 894 aa8.25□□□□□ -1.09
DEF1YKL054C MET10P39692 1035 aa8.25□□□□□ -1.09
DEF1YKL054C ATG36P46983 293 aa8.25□□□□□ -1.09
DEF1YKL054C YLR326WQ06170 240 aaKnown RBP8.24□□□□□ -1.09
DEF1YKL054C ILV3P39522 585 aaKnown RBP8.23□□□□□ -1.09
DEF1YKL054C YEL023CP39992 682 aa8.23□□□□□ -1.09
DEF1YKL054C ATG32P40458 529 aa8.23□□□□□ -1.09
DEF1YKL054C YDR090CQ03193 310 aa8.23□□□□□ -1.09
DEF1YKL054C YTA7P40340 1379 aa8.23□□□□□ -1.09
DEF1YKL054C SLD2P34252 453 aa8.23□□□□□ -1.09
DEF1YKL054C VHR2P40041 505 aa8.23□□□□□ -1.09
DEF1YKL054C SSA4P22202 642 aaKnown RBP8.22□□□□□ -1.09
DEF1YKL054C DAN4P47179 1161 aa8.21□□□□□ -1.1
DEF1YKL054C ATF2P53296 535 aa8.21□□□□□ -1.1
DEF1YKL054C SSF1P38789 453 aaPredicted RBP8.2□□□□□ -1.1
DEF1YKL054C FAR11P53917 953 aa8.2□□□□□ -1.1
DEF1YKL054C DOS2P54858 310 aa8.2□□□□□ -1.1
DEF1YKL054C KEX1P09620 729 aa8.19□□□□□ -1.1
DEF1YKL054C SPC42P36094 363 aa8.19□□□□□ -1.1
DEF1YKL054C OCA5P38738 679 aa8.19□□□□□ -1.1
DEF1YKL054C MPH3P0CE00 602 aa8.19□□□□□ -1.1
DEF1YKL054C PTC4P38089 393 aa8.19□□□□□ -1.1
DEF1YKL054C BRL1P38770 471 aa8.19□□□□□ -1.1
DEF1YKL054C NOB1Q08444 459 aaKnown RBP8.18□□□□□ -1.1
DEF1YKL054C LDB19Q12502 818 aa8.18□□□□□ -1.1
DEF1YKL054C COX6P00427 148 aa8.18□□□□□ -1.1
DEF1YKL054C AI4P03878 556 aa8.18□□□□□ -1.1
DEF1YKL054C HEM3P28789 327 aa8.18□□□□□ -1.1
DEF1YKL054C YJL007CP47080 104 aa8.17□□□□□ -1.1
DEF1YKL054C PCS60P38137 543 aaKnown RBP RIP-Chip data8.16□□□□□ -1.1not detected
DEF1YKL054C BRN1P38170 754 aa8.16□□□□□ -1.1
DEF1YKL054C JIP4Q03361 876 aa8.15□□□□□ -1.1
DEF1YKL054C LAM6Q08001 693 aa8.15□□□□□ -1.1
DEF1YKL054C ERG12P07277 443 aa8.15□□□□□ -1.1
DEF1YKL054C CDC3P32457 520 aaKnown RBP8.14□□□□□ -1.11
DEF1YKL054C TIF1P10081 395 aaKnown RBP8.13□□□□□ -1.11
DEF1YKL054C CPS1P27614 576 aa8.13□□□□□ -1.11
DEF1YKL054C YNL035CP53962 389 aaKnown RBP8.13□□□□□ -1.11
DEF1YKL054C YRB30P53107 440 aaPredicted RBP8.13□□□□□ -1.11
DEF1YKL054C TTI1P36097 1038 aa8.12□□□□□ -1.11
DEF1YKL054C RTG1P32607 177 aa8.11□□□□□ -1.11
DEF1YKL054C SSA2P10592 639 aaKnown RBP8.1□□□□□ -1.11
DEF1YKL054C SWE1P32944 819 aa8.1□□□□□ -1.11
DEF1YKL054C SLI15P38283 698 aa8.09□□□□□ -1.11
DEF1YKL054C FKH1P40466 484 aa8.09□□□□□ -1.11
DEF1YKL054C RAD54P32863 898 aa8.09□□□□□ -1.12
DEF1YKL054C SEC61P32915 480 aa8.08□□□□□ -1.12
DEF1YKL054C CSN12P47130 423 aa8.08□□□□□ -1.12
DEF1YKL054C NUG1P40010 520 aaKnown RBP8.07□□□□□ -1.12
DEF1YKL054C RPL34AP87262 121 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms