RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W YRF1-5P0CX21 1796 aa16.4■□□□□ 0.22
UBA4YHR111W YRF1-8P0CX22 1796 aa16.4■□□□□ 0.22
UBA4YHR111W GEA2P39993 1459 aaKnown RBP16.39■□□□□ 0.21
UBA4YHR111W RPO21P04050 1733 aaKnown RBP16.35■□□□□ 0.21
UBA4YHR111W BNI1P41832 1953 aa16.33■□□□□ 0.2
UBA4YHR111W VPS15P22219 1454 aa16.33■□□□□ 0.2
UBA4YHR111W SNQ2P32568 1501 aaKnown RBP16.28■□□□□ 0.2
UBA4YHR111W ITT1Q04638 464 aa16.27■□□□□ 0.2
UBA4YHR111W STH1P32597 1359 aa16.23■□□□□ 0.19
UBA4YHR111W SNT2P53127 1403 aa16.21■□□□□ 0.19
UBA4YHR111W DRS2P39524 1355 aa16.17■□□□□ 0.18
UBA4YHR111W MMS1Q06211 1407 aa16.1■□□□□ 0.17
UBA4YHR111W MET10P39692 1035 aa16.1■□□□□ 0.17
UBA4YHR111W RTT106P40161 455 aa16.08■□□□□ 0.16
UBA4YHR111W SPO14P36126 1683 aa16.04■□□□□ 0.16
UBA4YHR111W MLP2P40457 1679 aa16.04■□□□□ 0.16
UBA4YHR111W SAS10Q12136 610 aaPredicted RBP16.04■□□□□ 0.16
UBA4YHR111W ULS1Q08562 1619 aa16.04■□□□□ 0.16
UBA4YHR111W NUP170P38181 1502 aa16.03■□□□□ 0.16
UBA4YHR111W PDR12Q02785 1511 aa16.02■□□□□ 0.15
UBA4YHR111W MIF2P35201 549 aa16.01■□□□□ 0.15
UBA4YHR111W PDR15Q04182 1529 aaKnown RBP15.99■□□□□ 0.15
UBA4YHR111W ABP1P15891 592 aaKnown RBP15.94■□□□□ 0.14
UBA4YHR111W TAF7Q05021 590 aa15.93■□□□□ 0.14
UBA4YHR111W IRC20Q06554 1556 aa15.92■□□□□ 0.14
UBA4YHR111W GDB1Q06625 1536 aa15.92■□□□□ 0.14
UBA4YHR111W NUP157P40064 1391 aaKnown RBP15.89■□□□□ 0.13
UBA4YHR111W IQG1Q12280 1495 aa15.86■□□□□ 0.13
UBA4YHR111W DNF2Q12675 1612 aa15.83■□□□□ 0.13
UBA4YHR111W IFH1P39520 1085 aa15.82■□□□□ 0.12
UBA4YHR111W DOP1Q03921 1698 aa15.78■□□□□ 0.12
UBA4YHR111W PDR10P51533 1564 aa15.78■□□□□ 0.12
UBA4YHR111W TRM3Q07527 1436 aa15.78■□□□□ 0.12
UBA4YHR111W BUD3P25558 1636 aa15.76■□□□□ 0.11
UBA4YHR111W GEA1P47102 1408 aaPredicted RBP15.74■□□□□ 0.11
UBA4YHR111W CAT8P39113 1433 aa15.69■□□□□ 0.1
UBA4YHR111W TY3B-GQ99315 1547 aa15.66■□□□□ 0.1
UBA4YHR111W YBT1P32386 1661 aa15.63■□□□□ 0.09
UBA4YHR111W ARO1P08566 1588 aaKnown RBP15.6■□□□□ 0.09
UBA4YHR111W CHC1P22137 1653 aaKnown RBP15.58■□□□□ 0.08
UBA4YHR111W SEC7P11075 2009 aaKnown RBP15.53■□□□□ 0.08
UBA4YHR111W CKB1P43639 278 aa15.53■□□□□ 0.08
UBA4YHR111W YSP2Q06681 1438 aa15.51■□□□□ 0.07
UBA4YHR111W YFR006WP43590 535 aa15.51■□□□□ 0.07
UBA4YHR111W YOR093CQ12275 1648 aa15.46■□□□□ 0.06
UBA4YHR111W BNR1P40450 1375 aa15.45■□□□□ 0.06
UBA4YHR111W SRB8P25648 1427 aa15.34■□□□□ 0.05
UBA4YHR111W DNF3Q12674 1656 aa15.32■□□□□ 0.04
UBA4YHR111W YAP3P38749 330 aa15.31■□□□□ 0.04
UBA4YHR111W URN1Q06525 465 aaKnown RBP15.21■□□□□ 0.03
UBA4YHR111W BUD21Q08492 214 aaPredicted RBP15.19■□□□□ 0.02
UBA4YHR111W IKI3Q06706 1349 aaKnown RBP15.15■□□□□ 0.02
UBA4YHR111W MAK10Q02197 733 aa15.12■□□□□ 0.01
UBA4YHR111W NUP188P52593 1655 aaKnown RBP15.07■□□□□ 0
UBA4YHR111W IPL1P38991 367 aa15.06■□□□□ 0
UBA4YHR111W VMR1P38735 1592 aa15.01□□□□□ -0.01
UBA4YHR111W SSM4P40318 1319 aa15.01□□□□□ -0.01
UBA4YHR111W TYS1P36421 394 aaKnown RBP14.98□□□□□ -0.01
UBA4YHR111W HAP1P0CE41 1502 aa14.98□□□□□ -0.01
UBA4YHR111W IML1P47170 1584 aa14.98□□□□□ -0.01
UBA4YHR111W USO1P25386 1790 aa14.94□□□□□ -0.02
UBA4YHR111W PDR5P33302 1511 aaKnown RBP14.91□□□□□ -0.02
UBA4YHR111W GCN2P15442 1659 aa14.84□□□□□ -0.03
UBA4YHR111W TY1B-NL2Q99337 1749 aaKnown RBP14.82□□□□□ -0.04
UBA4YHR111W PDR11P40550 1411 aa14.79□□□□□ -0.04
UBA4YHR111W YMR196WQ04336 1088 aa14.79□□□□□ -0.04
UBA4YHR111W THI12P42883 340 aa14.75□□□□□ -0.05
UBA4YHR111W THI5P43534 340 aa14.75□□□□□ -0.05
UBA4YHR111W THI11P47183 340 aa14.75□□□□□ -0.05
UBA4YHR111W THI13Q07748 340 aa14.75□□□□□ -0.05
UBA4YHR111W PAF1P38351 445 aa14.63□□□□□ -0.07
UBA4YHR111W RAV1P47104 1357 aa14.62□□□□□ -0.07
UBA4YHR111W KRE5P22023 1365 aa14.61□□□□□ -0.07
UBA4YHR111W MRX12P47084 519 aa14.59□□□□□ -0.07
UBA4YHR111W CFT1Q06632 1357 aaKnown RBP14.58□□□□□ -0.08
UBA4YHR111W RIA1P53893 1110 aa14.57□□□□□ -0.08
UBA4YHR111W BCK1Q01389 1478 aa14.56□□□□□ -0.08
UBA4YHR111W BFR2Q06631 534 aaKnown RBP14.55□□□□□ -0.08
UBA4YHR111W RTC1Q08281 1341 aa14.52□□□□□ -0.09
UBA4YHR111W YNR029CP53729 429 aaKnown RBP14.49□□□□□ -0.09
UBA4YHR111W NOP7P53261 605 aaKnown RBP14.48□□□□□ -0.09
UBA4YHR111W NUP192P47054 1683 aa14.47□□□□□ -0.09
UBA4YHR111W CAB1Q04430 367 aa14.47□□□□□ -0.09
UBA4YHR111W RAD9P14737 1309 aa14.46□□□□□ -0.09
UBA4YHR111W ALD4P46367 519 aaKnown RBP14.46□□□□□ -0.09
UBA4YHR111W PTP3P40048 928 aa14.37□□□□□ -0.11
UBA4YHR111W YAH1Q12184 172 aaKnown RBP14.36□□□□□ -0.11
UBA4YHR111W TY3B-IQ7LHG5 1498 aaKnown RBP14.32□□□□□ -0.12
UBA4YHR111W ESL2P36168 1195 aa14.29□□□□□ -0.12
UBA4YHR111W NAP1P25293 417 aaKnown RBP14.28□□□□□ -0.12
UBA4YHR111W TAF5P38129 798 aa14.28□□□□□ -0.12
UBA4YHR111W APP1P53933 587 aa14.28□□□□□ -0.12
UBA4YHR111W TAF8Q03750 510 aa14.26□□□□□ -0.13
UBA4YHR111W REB1P21538 810 aa14.18□□□□□ -0.14
UBA4YHR111W RCM1P53972 490 aa14.17□□□□□ -0.14
UBA4YHR111W CPS1P27614 576 aa14.16□□□□□ -0.14
UBA4YHR111W YIL055CP40523 627 aaKnown RBP14.16□□□□□ -0.14
UBA4YHR111W ENT1Q12518 454 aa14.15□□□□□ -0.15
UBA4YHR111W GLN1P32288 370 aaKnown RBP14.14□□□□□ -0.15
UBA4YHR111W FAP1P53971 965 aa14.14□□□□□ -0.15
Retrieved 100 of 5,963 RNA–protein pairs in 43 ms