RNA–Protein interactions for RNA: YBL006C

LDB7, Transcript of Component of the RSC chromatin remodeling complex, yeastyeast

Gene LDB7, Length 543 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LDB7YBL006C VTH2P40890 1549 aa11.59□□□□□ -0.55
LDB7YBL006C RPO21P04050 1733 aaKnown RBP11.58□□□□□ -0.56
LDB7YBL006C TSC11P40061 1430 aa11.57□□□□□ -0.56
LDB7YBL006C VPS15P22219 1454 aa11.56□□□□□ -0.56
LDB7YBL006C ITT1Q04638 464 aa11.49□□□□□ -0.57
LDB7YBL006C MYO4P32492 1471 aa11.48□□□□□ -0.57
LDB7YBL006C MIF2P35201 549 aa11.47□□□□□ -0.57
LDB7YBL006C SNQ2P32568 1501 aaKnown RBP11.44□□□□□ -0.58
LDB7YBL006C MMS1Q06211 1407 aa11.43□□□□□ -0.58
LDB7YBL006C DRS2P39524 1355 aa11.42□□□□□ -0.58
LDB7YBL006C IRC20Q06554 1556 aa11.4□□□□□ -0.58
LDB7YBL006C SNT2P53127 1403 aa11.37□□□□□ -0.59
LDB7YBL006C YTA7P40340 1379 aa11.36□□□□□ -0.59
LDB7YBL006C SPO14P36126 1683 aa11.36□□□□□ -0.59
LDB7YBL006C DNF2Q12675 1612 aa11.33□□□□□ -0.6
LDB7YBL006C NUP170P38181 1502 aa11.33□□□□□ -0.6
LDB7YBL006C ULS1Q08562 1619 aa11.31□□□□□ -0.6
LDB7YBL006C MLP2P40457 1679 aa11.3□□□□□ -0.6
LDB7YBL006C PDR12Q02785 1511 aa11.28□□□□□ -0.6
LDB7YBL006C ABP1P15891 592 aaKnown RBP11.27□□□□□ -0.61
LDB7YBL006C STH1P32597 1359 aa11.24□□□□□ -0.61
LDB7YBL006C DOP1Q03921 1698 aa11.23□□□□□ -0.61
LDB7YBL006C GDB1Q06625 1536 aa11.22□□□□□ -0.61
LDB7YBL006C MET10P39692 1035 aa11.18□□□□□ -0.62
LDB7YBL006C PDR15Q04182 1529 aaKnown RBP11.16□□□□□ -0.62
LDB7YBL006C TRM3Q07527 1436 aa11.15□□□□□ -0.62
LDB7YBL006C IQG1Q12280 1495 aa11.14□□□□□ -0.63
LDB7YBL006C PDR10P51533 1564 aa11.11□□□□□ -0.63
LDB7YBL006C NUP157P40064 1391 aaKnown RBP11.09□□□□□ -0.63
LDB7YBL006C YFR006WP43590 535 aa11.09□□□□□ -0.63
LDB7YBL006C RTT106P40161 455 aa11.08□□□□□ -0.64
LDB7YBL006C BUD3P25558 1636 aa11.07□□□□□ -0.64
LDB7YBL006C CHC1P22137 1653 aaKnown RBP11.07□□□□□ -0.64
LDB7YBL006C YOR093CQ12275 1648 aa11.06□□□□□ -0.64
LDB7YBL006C ARO1P08566 1588 aaKnown RBP11.03□□□□□ -0.64
LDB7YBL006C YBT1P32386 1661 aa10.98□□□□□ -0.65
LDB7YBL006C TY3B-GQ99315 1547 aa10.95□□□□□ -0.66
LDB7YBL006C SAS10Q12136 610 aaPredicted RBP10.93□□□□□ -0.66
LDB7YBL006C DNF3Q12674 1656 aa10.91□□□□□ -0.66
LDB7YBL006C SEC7P11075 2009 aaKnown RBP10.9□□□□□ -0.66
LDB7YBL006C CAT8P39113 1433 aa10.9□□□□□ -0.66
LDB7YBL006C GEA1P47102 1408 aaPredicted RBP10.89□□□□□ -0.67
LDB7YBL006C TAF7Q05021 590 aa10.87□□□□□ -0.67
LDB7YBL006C IFH1P39520 1085 aa10.83□□□□□ -0.68
LDB7YBL006C YSP2Q06681 1438 aa10.82□□□□□ -0.68
LDB7YBL006C BNR1P40450 1375 aa10.73□□□□□ -0.69
LDB7YBL006C YAP3P38749 330 aa10.67□□□□□ -0.7
LDB7YBL006C CKB1P43639 278 aa10.67□□□□□ -0.7
LDB7YBL006C FAP1P53971 965 aa10.66□□□□□ -0.7
LDB7YBL006C USO1P25386 1790 aa10.64□□□□□ -0.71
LDB7YBL006C SRB8P25648 1427 aa10.61□□□□□ -0.71
LDB7YBL006C IML1P47170 1584 aa10.59□□□□□ -0.71
LDB7YBL006C NUP188P52593 1655 aaKnown RBP10.58□□□□□ -0.72
LDB7YBL006C MAK10Q02197 733 aa10.57□□□□□ -0.72
LDB7YBL006C HAP1P0CE41 1502 aa10.57□□□□□ -0.72
LDB7YBL006C VMR1P38735 1592 aa10.54□□□□□ -0.72
LDB7YBL006C URN1Q06525 465 aaKnown RBP10.51□□□□□ -0.73
LDB7YBL006C TY1B-NL2Q99337 1749 aaKnown RBP10.48□□□□□ -0.73
LDB7YBL006C IPL1P38991 367 aa10.44□□□□□ -0.74
LDB7YBL006C BUD21Q08492 214 aaPredicted RBP10.41□□□□□ -0.74
LDB7YBL006C PDR5P33302 1511 aaKnown RBP10.38□□□□□ -0.75
LDB7YBL006C TYS1P36421 394 aaKnown RBP10.38□□□□□ -0.75
LDB7YBL006C THI12P42883 340 aa10.33□□□□□ -0.76
LDB7YBL006C THI5P43534 340 aa10.33□□□□□ -0.76
LDB7YBL006C THI11P47183 340 aa10.33□□□□□ -0.76
LDB7YBL006C THI13Q07748 340 aa10.33□□□□□ -0.76
LDB7YBL006C YMR196WQ04336 1088 aa10.32□□□□□ -0.76
LDB7YBL006C GCN2P15442 1659 aa10.3□□□□□ -0.76
LDB7YBL006C IKI3Q06706 1349 aaKnown RBP10.3□□□□□ -0.76
LDB7YBL006C PDR11P40550 1411 aa10.27□□□□□ -0.77
LDB7YBL006C SSM4P40318 1319 aa10.25□□□□□ -0.77
LDB7YBL006C CFT1Q06632 1357 aaKnown RBP10.18□□□□□ -0.78
LDB7YBL006C KRE5P22023 1365 aa10.16□□□□□ -0.78
LDB7YBL006C NUP192P47054 1683 aa10.16□□□□□ -0.78
LDB7YBL006C BCK1Q01389 1478 aa10.15□□□□□ -0.78
LDB7YBL006C YAH1Q12184 172 aaKnown RBP10.09□□□□□ -0.79
LDB7YBL006C RIA1P53893 1110 aa10.08□□□□□ -0.8
LDB7YBL006C RAV1P47104 1357 aa10.08□□□□□ -0.8
LDB7YBL006C PTP3P40048 928 aa10.06□□□□□ -0.8
LDB7YBL006C YNR029CP53729 429 aaKnown RBP10.06□□□□□ -0.8
LDB7YBL006C MRX12P47084 519 aa10.04□□□□□ -0.8
LDB7YBL006C APP1P53933 587 aa10.02□□□□□ -0.81
LDB7YBL006C GLN1P32288 370 aaKnown RBP10□□□□□ -0.81
LDB7YBL006C PRY3P47033 881 aa10□□□□□ -0.81
LDB7YBL006C TY3B-IQ7LHG5 1498 aaKnown RBP9.99□□□□□ -0.81
LDB7YBL006C RAD9P14737 1309 aa9.99□□□□□ -0.81
LDB7YBL006C YRF1-2P40105 1681 aa9.97□□□□□ -0.81
LDB7YBL006C YIL055CP40523 627 aaKnown RBP9.97□□□□□ -0.81
LDB7YBL006C CAB1Q04430 367 aa9.97□□□□□ -0.81
LDB7YBL006C RTC1Q08281 1341 aa9.97□□□□□ -0.81
LDB7YBL006C RRP5Q05022 1729 aaKnown RBP9.94□□□□□ -0.82
LDB7YBL006C PAF1P38351 445 aa9.94□□□□□ -0.82
LDB7YBL006C REB1P21538 810 aa9.93□□□□□ -0.82
LDB7YBL006C ALD4P46367 519 aaKnown RBP9.93□□□□□ -0.82
LDB7YBL006C BFR2Q06631 534 aaKnown RBP9.92□□□□□ -0.82
LDB7YBL006C TY4B-HP0C2J7 1802 aa9.89□□□□□ -0.83
LDB7YBL006C TY4B-JP47024 1803 aa9.89□□□□□ -0.83
LDB7YBL006C ENT1Q12518 454 aa9.85□□□□□ -0.83
LDB7YBL006C NOP7P53261 605 aaKnown RBP9.83□□□□□ -0.84
LDB7YBL006C YMR074CQ04773 145 aa9.83□□□□□ -0.84
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms