RNA–Protein interactions for RNA: ENST00000640352.1

CNTN2-231, Transcript of contactin 2, human

TSL 5

Gene CNTN2, Length 4,000 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNTN2-231	ENST00000640352	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.61	□□□□□ -0.39
CNTN2-231	ENST00000640352	TOPBP1	Q92547	1522 aa		12.59	□□□□□ -0.39
CNTN2-231	ENST00000640352	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.59	□□□□□ -0.39
CNTN2-231	ENST00000640352	URB2	Q14146	1524 aa	Known RBP	12.57	□□□□□ -0.4
CNTN2-231	ENST00000640352	POLA1	P09884	1462 aa	Predicted RBP	12.56	□□□□□ -0.4
CNTN2-231	ENST00000640352	EIF5B	O60841	1220 aa	Known RBP	12.55	□□□□□ -0.4
CNTN2-231	ENST00000640352	JPH4	Q96JJ6	628 aa		12.55	□□□□□ -0.4
CNTN2-231	ENST00000640352	CUX1	P39880	1505 aa		12.55	□□□□□ -0.4
CNTN2-231	ENST00000640352	KIF21A	Q7Z4S6	1674 aa		12.55	□□□□□ -0.4
CNTN2-231	ENST00000640352	FAM50A	Q14320	339 aa	Known RBP	12.54	□□□□□ -0.4
CNTN2-231	ENST00000640352	BCAN	Q96GW7	911 aa		12.54	□□□□□ -0.4
CNTN2-231	ENST00000640352	GAPVD1	Q14C86	1478 aa		12.52	□□□□□ -0.4
CNTN2-231	ENST00000640352	SYNJ1	O43426	1573 aa		12.52	□□□□□ -0.4
CNTN2-231	ENST00000640352	IGF1R	P08069	1367 aa		12.5	□□□□□ -0.41
CNTN2-231	ENST00000640352	TNIK	Q9UKE5	1360 aa		12.49	□□□□□ -0.41
CNTN2-231	ENST00000640352	RAPGEF2	Q9Y4G8	1499 aa		12.45	□□□□□ -0.42
CNTN2-231	ENST00000640352	IFT140	Q96RY7	1462 aa		12.43	□□□□□ -0.42
CNTN2-231	ENST00000640352	DNMBP	Q6XZF7	1577 aa		12.42	□□□□□ -0.42
CNTN2-231	ENST00000640352	SNAPC4	Q5SXM2	1469 aa		12.42	□□□□□ -0.42
CNTN2-231	ENST00000640352	CLIP1	P30622	1438 aa		12.42	□□□□□ -0.42
CNTN2-231	ENST00000640352	CHIC2	Q9UKJ5	165 aa		12.4	□□□□□ -0.42
CNTN2-231	ENST00000640352	SENP3	Q9H4L4	574 aa	Predicted RBP	12.38	□□□□□ -0.43
CNTN2-231	ENST00000640352	SUPT16H	Q9Y5B9	1047 aa	Known RBP	12.37	□□□□□ -0.43
CNTN2-231	ENST00000640352	GOLGA3	Q08378	1498 aa		12.37	□□□□□ -0.43
CNTN2-231	ENST00000640352	GRIN2B	Q13224	1484 aa		12.37	□□□□□ -0.43
CNTN2-231	ENST00000640352	PLEKHD1	A6NEE1	506 aa		12.37	□□□□□ -0.43
CNTN2-231	ENST00000640352	FHOD3	Q2V2M9	1422 aa		12.36	□□□□□ -0.43
CNTN2-231	ENST00000640352	WDR62	O43379	1518 aa		12.36	□□□□□ -0.43
CNTN2-231	ENST00000640352	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.36	□□□□□ -0.43
CNTN2-231	ENST00000640352	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.35	□□□□□ -0.43
CNTN2-231	ENST00000640352	KANK4	Q5T7N3	995 aa	Predicted RBP	12.34	□□□□□ -0.43
CNTN2-231	ENST00000640352	THOC2	Q8NI27	1593 aa	Known RBP	12.33	□□□□□ -0.43
CNTN2-231	ENST00000640352	ANP32E	Q9BTT0	268 aa		12.32	□□□□□ -0.44
CNTN2-231	ENST00000640352	EEA1	Q15075	1411 aa		12.31	□□□□□ -0.44
CNTN2-231	ENST00000640352	MTUS2	Q5JR59	1369 aa		12.3	□□□□□ -0.44
CNTN2-231	ENST00000640352	TOP2B	Q02880	1626 aa		12.29	□□□□□ -0.44
CNTN2-231	ENST00000640352	PTPRG	P23470	1445 aa		12.29	□□□□□ -0.44
CNTN2-231	ENST00000640352	FHAD1	B1AJZ9	1412 aa		12.28	□□□□□ -0.44
CNTN2-231	ENST00000640352	PRG4	Q92954	1404 aa	Predicted RBP	12.28	□□□□□ -0.44
CNTN2-231	ENST00000640352	MLEC	Q14165	292 aa		12.28	□□□□□ -0.44
CNTN2-231	ENST00000640352	CLSPN	Q9HAW4	1339 aa		12.28	□□□□□ -0.44
CNTN2-231	ENST00000640352	TRIM52	Q96A61	297 aa		12.28	□□□□□ -0.44
CNTN2-231	ENST00000640352	DDX10	Q13206	875 aa	Known RBP	12.27	□□□□□ -0.44
CNTN2-231	ENST00000640352	FKBP8	Q14318	412 aa		12.27	□□□□□ -0.44
CNTN2-231	ENST00000640352	CARMIL2	Q6F5E8	1435 aa		12.27	□□□□□ -0.45
CNTN2-231	ENST00000640352	FAM69C	Q0P6D2	419 aa		12.27	□□□□□ -0.45
CNTN2-231	ENST00000640352	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.27	□□□□□ -0.45
CNTN2-231	ENST00000640352	TSHZ2	Q9NRE2	1034 aa		12.25	□□□□□ -0.45
CNTN2-231	ENST00000640352	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.25	□□□□□ -0.45
CNTN2-231	ENST00000640352	ABCA10	Q8WWZ4	1543 aa		12.24	□□□□□ -0.45
CNTN2-231	ENST00000640352	VPS8	Q8N3P4	1428 aa		12.24	□□□□□ -0.45
CNTN2-231	ENST00000640352	DNAJC5	Q9H3Z4	198 aa		12.23	□□□□□ -0.45
CNTN2-231	ENST00000640352	RTL5	Q5HYW3	569 aa	Predicted RBP	12.23	□□□□□ -0.45
CNTN2-231	ENST00000640352	DHX57	Q6P158	1386 aa	Known RBP	12.22	□□□□□ -0.45
CNTN2-231	ENST00000640352	GLIPR1L2	Q4G1C9	344 aa		12.22	□□□□□ -0.45
CNTN2-231	ENST00000640352	SIN3A	Q96ST3	1273 aa		12.21	□□□□□ -0.45
CNTN2-231	ENST00000640352	CFDP1	Q9UEE9	299 aa	Predicted RBP	12.21	□□□□□ -0.45
CNTN2-231	ENST00000640352	RRP7BP	Q9NSQ0	103 aa		12.21	□□□□□ -0.46
CNTN2-231	ENST00000640352	PRDM2	Q13029	1718 aa		12.2	□□□□□ -0.46
CNTN2-231	ENST00000640352	EIF4G3	O43432	1585 aa	Known RBP	12.19	□□□□□ -0.46
CNTN2-231	ENST00000640352	SYNJ2	O15056	1496 aa		12.17	□□□□□ -0.46
CNTN2-231	ENST00000640352	GRIN2A	Q12879	1464 aa		12.16	□□□□□ -0.46
CNTN2-231	ENST00000640352	ANP32C	O43423	234 aa		12.16	□□□□□ -0.46
CNTN2-231	ENST00000640352	CNGB1	Q14028	1251 aa	Predicted RBP	12.15	□□□□□ -0.46
CNTN2-231	ENST00000640352	IRX6	P78412	446 aa	Predicted RBP	12.15	□□□□□ -0.47
CNTN2-231	ENST00000640352	CCDC136	Q96JN2	1154 aa		12.14	□□□□□ -0.47
CNTN2-231	ENST00000640352	ESF1	Q9H501	851 aa	Known RBP	12.14	□□□□□ -0.47
CNTN2-231	ENST00000640352	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.14	□□□□□ -0.47
CNTN2-231	ENST00000640352	TARBP1	Q13395	1621 aa	Known RBP	12.14	□□□□□ -0.47
CNTN2-231	ENST00000640352	TSPY4	P0CV99	314 aa		12.13	□□□□□ -0.47
CNTN2-231	ENST00000640352	TSPY10	P0CW01	314 aa		12.13	□□□□□ -0.47
CNTN2-231	ENST00000640352	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.13	□□□□□ -0.47
CNTN2-231	ENST00000640352	BIVM-ERCC5	R4GMW8	1640 aa		12.13	□□□□□ -0.47
CNTN2-231	ENST00000640352	CHGA	P10645	457 aa	Known RBP	12.12	□□□□□ -0.47
CNTN2-231	ENST00000640352	KIF21B	O75037	1637 aa		12.12	□□□□□ -0.47
CNTN2-231	ENST00000640352	PRX	Q9BXM0	1461 aa		12.11	□□□□□ -0.47
CNTN2-231	ENST00000640352	ZNF326	Q5BKZ1	582 aa	Known RBP	12.11	□□□□□ -0.47
CNTN2-231	ENST00000640352	ZNF644	Q9H582	1327 aa	Predicted RBP	12.1	□□□□□ -0.47
CNTN2-231	ENST00000640352	PODXL2	Q9NZ53	605 aa		12.09	□□□□□ -0.47
CNTN2-231	ENST00000640352	RTN4	Q9NQC3	1192 aa	Known RBP	12.09	□□□□□ -0.47
CNTN2-231	ENST00000640352	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.08	□□□□□ -0.47
CNTN2-231	ENST00000640352	GGT6	Q6P531	493 aa		12.08	□□□□□ -0.48
CNTN2-231	ENST00000640352	PLB1	Q6P1J6	1458 aa		12.08	□□□□□ -0.48
CNTN2-231	ENST00000640352	POLR3GL	Q9BT43	218 aa		12.07	□□□□□ -0.48
CNTN2-231	ENST00000640352	RAPGEF3	O95398	923 aa		12.06	□□□□□ -0.48
CNTN2-231	ENST00000640352	CCNB3	Q8WWL7	1395 aa		12.06	□□□□□ -0.48
CNTN2-231	ENST00000640352	ERICH3	Q5RHP9	1530 aa		12.05	□□□□□ -0.48
CNTN2-231	ENST00000640352	KIAA0586	Q9BVV6	1533 aa		12.05	□□□□□ -0.48
CNTN2-231	ENST00000640352	RAB3GAP2	Q9H2M9	1393 aa		12.05	□□□□□ -0.48
CNTN2-231	ENST00000640352	ARAP1	Q96P48	1450 aa		12.04	□□□□□ -0.48
CNTN2-231	ENST00000640352	AFAP1	Q8N556	730 aa		12.03	□□□□□ -0.48
CNTN2-231	ENST00000640352	FMN1	Q68DA7	1419 aa		12.03	□□□□□ -0.48
CNTN2-231	ENST00000640352	RBM19	Q9Y4C8	960 aa	Known RBP	12.02	□□□□□ -0.48
CNTN2-231	ENST00000640352	DAXX	Q9UER7	740 aa	Predicted RBP	12.02	□□□□□ -0.49
CNTN2-231	ENST00000640352	SENP3-EIF4A1	A0A087X0R7	540 aa		12.02	□□□□□ -0.49
CNTN2-231	ENST00000640352	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.02	□□□□□ -0.49
CNTN2-231	ENST00000640352	ARHGAP35	Q9NRY4	1499 aa		12.02	□□□□□ -0.49
CNTN2-231	ENST00000640352	EFCAB2	Q5VUJ9	269 aa		12.02	□□□□□ -0.49
CNTN2-231	ENST00000640352	NBR1	Q14596	966 aa		12	□□□□□ -0.49
CNTN2-231	ENST00000640352	STAG3	Q9UJ98	1225 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms