RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 KIF21BO75037 1637 aa21.77■■□□□ 1.07
GTF3A-209ENST00000640289 ARHGEF11O15085 1522 aa21.76■■□□□ 1.07
GTF3A-209ENST00000640289 JPH4Q96JJ6 628 aa21.75■■□□□ 1.07
GTF3A-209ENST00000640289 SHROOM2Q13796 1616 aa21.73■■□□□ 1.07
GTF3A-209ENST00000640289 RIMBP3CA6NJZ7 1639 aa21.72■■□□□ 1.07
GTF3A-209ENST00000640289 RIMBP3BA6NNM3 1639 aa21.72■■□□□ 1.07
GTF3A-209ENST00000640289 RIMBP3Q9UFD9 1639 aa21.72■■□□□ 1.07
GTF3A-209ENST00000640289 IQGAP2Q13576 1575 aa21.71■■□□□ 1.07
GTF3A-209ENST00000640289 PRG4Q92954 1404 aaPredicted RBP21.7■■□□□ 1.06
GTF3A-209ENST00000640289 ERCC6L2Q5T890 1561 aa21.7■■□□□ 1.06
GTF3A-209ENST00000640289 GOLGA3Q08378 1498 aa21.69■■□□□ 1.06
GTF3A-209ENST00000640289 CTTNBP2Q8WZ74 1663 aa21.66■■□□□ 1.06
GTF3A-209ENST00000640289 UBTFP17480 764 aaKnown RBP21.64■■□□□ 1.05
GTF3A-209ENST00000640289 ARAP1Q96P48 1450 aa21.62■■□□□ 1.05
GTF3A-209ENST00000640289 UGGT2Q9NYU1 1516 aa21.6■■□□□ 1.05
GTF3A-209ENST00000640289 DISP1Q96F81 1524 aa21.57■■□□□ 1.04
GTF3A-209ENST00000640289 RANGAP1P46060 587 aaPredicted RBP21.57■■□□□ 1.04
GTF3A-209ENST00000640289 CYB5RLQ6IPT4 315 aa21.57■■□□□ 1.04
GTF3A-209ENST00000640289 CARMIL2Q6F5E8 1435 aa21.55■■□□□ 1.04
GTF3A-209ENST00000640289 KIAA0556O60303 1618 aa21.51■■□□□ 1.03
GTF3A-209ENST00000640289 LOC105371045A0A1W2PR82 267 aa21.51■■□□□ 1.03
GTF3A-209ENST00000640289 TTBK1Q5TCY1 1321 aaPredicted RBP21.51■■□□□ 1.03
GTF3A-209ENST00000640289 TNIKQ9UKE5 1360 aa21.48■■□□□ 1.03
GTF3A-209ENST00000640289 P3H3Q8IVL6 736 aa21.48■■□□□ 1.03
GTF3A-209ENST00000640289 PTPRGP23470 1445 aa21.46■■□□□ 1.03
GTF3A-209ENST00000640289 SAMD9Q5K651 1589 aa21.44■■□□□ 1.02
GTF3A-209ENST00000640289 FHOD3Q2V2M9 1422 aa21.39■■□□□ 1.02
GTF3A-209ENST00000640289 EFCAB5A4FU69 1503 aa21.38■■□□□ 1.01
GTF3A-209ENST00000640289 ARHGAP35Q9NRY4 1499 aa21.37■■□□□ 1.01
GTF3A-209ENST00000640289 CLIP1P30622 1438 aa21.32■■□□□ 1
GTF3A-209ENST00000640289 UACAQ9BZF9 1416 aa21.32■■□□□ 1
GTF3A-209ENST00000640289 PLB1Q6P1J6 1458 aa21.31■■□□□ 1
GTF3A-209ENST00000640289 ADCY10Q96PN6 1610 aa21.3■■□□□ 1
GTF3A-209ENST00000640289 CEP162Q5TB80 1403 aa21.29■■□□□ 1
GTF3A-209ENST00000640289 ABCC2Q92887 1545 aa21.26■□□□□ 0.99
GTF3A-209ENST00000640289 ABCA8O94911 1581 aa21.26■□□□□ 0.99
GTF3A-209ENST00000640289 UHRF1BP1LA0JNW5 1464 aa21.26■□□□□ 0.99
GTF3A-209ENST00000640289 NPM1P06748 294 aaKnown RBP eCLIP21.21■□□□□ 0.99
GTF3A-209ENST00000640289 FMN1Q68DA7 1419 aa21.2■□□□□ 0.98
GTF3A-209ENST00000640289 ARID3CA6NKF2 412 aa21.19■□□□□ 0.98
GTF3A-209ENST00000640289 RAPGEF6Q8TEU7 1601 aa21.18■□□□□ 0.98
GTF3A-209ENST00000640289 KDM5BQ9UGL1 1544 aa21.17■□□□□ 0.98
GTF3A-209ENST00000640289 NUP153P49790 1475 aaKnown RBP21.14■□□□□ 0.98
GTF3A-209ENST00000640289 ATP1B4Q9UN42 357 aaPredicted RBP21.12■□□□□ 0.97
GTF3A-209ENST00000640289 ZCCHC11Q5TAX3 1644 aaKnown RBP21.11■□□□□ 0.97
GTF3A-209ENST00000640289 ATP10BO94823 1461 aa21.11■□□□□ 0.97
GTF3A-209ENST00000640289 MAPKBP1O60336 1514 aa21.09■□□□□ 0.97
GTF3A-209ENST00000640289 PCF11O94913 1555 aaKnown RBP21.09■□□□□ 0.97
GTF3A-209ENST00000640289 ASXL2Q76L83 1435 aa21.08■□□□□ 0.97
GTF3A-209ENST00000640289 CASKIN1Q8WXD9 1431 aa21.07■□□□□ 0.96
GTF3A-209ENST00000640289 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.07■□□□□ 0.96
GTF3A-209ENST00000640289 HNRNPUL2Q1KMD3 747 aaKnown RBP21.07■□□□□ 0.96
GTF3A-209ENST00000640289 HECW1Q76N89 1606 aa21.07■□□□□ 0.96
GTF3A-209ENST00000640289 TRHP20396 242 aaPredicted RBP21.06■□□□□ 0.96
GTF3A-209ENST00000640289 CDK13Q14004 1512 aaKnown RBP21.04■□□□□ 0.96
GTF3A-209ENST00000640289 EPRSP07814 1512 aaKnown RBP21.03■□□□□ 0.96
GTF3A-209ENST00000640289 FYCO1Q9BQS8 1478 aa21.02■□□□□ 0.96
GTF3A-209ENST00000640289 VPS8Q8N3P4 1428 aa21.01■□□□□ 0.95
GTF3A-209ENST00000640289 WDR7Q9Y4E6 1490 aa21■□□□□ 0.95
GTF3A-209ENST00000640289 ABCC10Q5T3U5 1492 aa20.99■□□□□ 0.95
GTF3A-209ENST00000640289 FAM69CQ0P6D2 419 aa20.97■□□□□ 0.95
GTF3A-209ENST00000640289 LRRIQ1Q96JM4 1722 aa20.96■□□□□ 0.95
GTF3A-209ENST00000640289 KCNH8Q96L42 1107 aa20.96■□□□□ 0.95
GTF3A-209ENST00000640289 DIP2BQ9P265 1576 aa20.96■□□□□ 0.95
GTF3A-209ENST00000640289 PLEKHD1A6NEE1 506 aa20.94■□□□□ 0.94
GTF3A-209ENST00000640289 CCDC18Q5T9S5 1454 aa20.94■□□□□ 0.94
GTF3A-209ENST00000640289 KIF13AQ9H1H9 1805 aa20.9■□□□□ 0.94
GTF3A-209ENST00000640289 CDK11AQ9UQ88 783 aaPredicted RBP20.89■□□□□ 0.93
GTF3A-209ENST00000640289 GLI2P10070 1586 aa20.87■□□□□ 0.93
GTF3A-209ENST00000640289 MAGI3Q5TCQ9 1506 aa20.86■□□□□ 0.93
GTF3A-209ENST00000640289 TROQ12816 1431 aaPredicted RBP20.85■□□□□ 0.93
GTF3A-209ENST00000640289 TIAM1Q13009 1591 aa20.8■□□□□ 0.92
GTF3A-209ENST00000640289 CD109Q6YHK3 1445 aa20.78■□□□□ 0.92
GTF3A-209ENST00000640289 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.78■□□□□ 0.92
GTF3A-209ENST00000640289 MAP3K4Q9Y6R4 1608 aa20.78■□□□□ 0.92
GTF3A-209ENST00000640289 CFAP43Q8NDM7 1665 aa20.78■□□□□ 0.92
GTF3A-209ENST00000640289 MTUS2Q5JR59 1369 aa20.78■□□□□ 0.92
GTF3A-209ENST00000640289 KIF14Q15058 1648 aa20.78■□□□□ 0.92
GTF3A-209ENST00000640289 ABCA9Q8IUA7 1624 aa20.78■□□□□ 0.92
GTF3A-209ENST00000640289 TTC37Q6PGP7 1564 aa20.76■□□□□ 0.91
GTF3A-209ENST00000640289 APLP2Q06481 763 aa20.75■□□□□ 0.91
GTF3A-209ENST00000640289 KANK4Q5T7N3 995 aaPredicted RBP20.75■□□□□ 0.91
GTF3A-209ENST00000640289 MAP3K1Q13233 1512 aa20.74■□□□□ 0.91
GTF3A-209ENST00000640289 EHBP1L1Q8N3D4 1523 aa20.73■□□□□ 0.91
GTF3A-209ENST00000640289 TSPOAP1O95153 1857 aa20.73■□□□□ 0.91
GTF3A-209ENST00000640289 PPRC1Q5VV67 1664 aaKnown RBP20.73■□□□□ 0.91
GTF3A-209ENST00000640289 LRRC9Q6ZRR7 1453 aa20.72■□□□□ 0.91
GTF3A-209ENST00000640289 TEX14Q8IWB6 1497 aa20.67■□□□□ 0.9
GTF3A-209ENST00000640289 PLCH2O75038 1416 aa20.66■□□□□ 0.9
GTF3A-209ENST00000640289 NCOA2Q15596 1464 aa20.64■□□□□ 0.89
GTF3A-209ENST00000640289 CCNB3Q8WWL7 1395 aa20.62■□□□□ 0.89
GTF3A-209ENST00000640289 GPATCH8Q9UKJ3 1502 aaKnown RBP20.61■□□□□ 0.89
GTF3A-209ENST00000640289 FANCAO15360 1455 aa20.61■□□□□ 0.89
GTF3A-209ENST00000640289 SUPT6HQ7KZ85 1726 aaKnown RBP20.61■□□□□ 0.89
GTF3A-209ENST00000640289 MYO5CQ9NQX4 1742 aa20.61■□□□□ 0.89
GTF3A-209ENST00000640289 ARHGAP5Q13017 1502 aa20.59■□□□□ 0.89
GTF3A-209ENST00000640289 NEO1Q92859 1461 aa20.59■□□□□ 0.89
GTF3A-209ENST00000640289 PPARGC1BQ86YN6 1023 aaKnown RBP20.59■□□□□ 0.89
GTF3A-209ENST00000640289 COL17A1Q9UMD9 1497 aaPredicted RBP20.58■□□□□ 0.89
GTF3A-209ENST00000640289 ARAP3Q8WWN8 1544 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms