RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SYNJ2O15056 1496 aa16.76■□□□□ 0.27
CLN3-248ENST00000636355 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
CLN3-248ENST00000636355 IQGAP2Q13576 1575 aa16.73■□□□□ 0.27
CLN3-248ENST00000636355 SAMD9Q5K651 1589 aa16.73■□□□□ 0.27
CLN3-248ENST00000636355 ARAP1Q96P48 1450 aa16.73■□□□□ 0.27
CLN3-248ENST00000636355 ARHGAP35Q9NRY4 1499 aa16.73■□□□□ 0.27
CLN3-248ENST00000636355 KIAA0586Q9BVV6 1533 aa16.65■□□□□ 0.26
CLN3-248ENST00000636355 UGGT2Q9NYU1 1516 aa16.65■□□□□ 0.26
CLN3-248ENST00000636355 NUP160Q12769 1436 aa16.64■□□□□ 0.25
CLN3-248ENST00000636355 CEP170Q5SW79 1584 aa16.62■□□□□ 0.25
CLN3-248ENST00000636355 MAP3K1Q13233 1512 aa16.61■□□□□ 0.25
CLN3-248ENST00000636355 CHD1O14646 1710 aa16.61■□□□□ 0.25
CLN3-248ENST00000636355 FYCO1Q9BQS8 1478 aa16.59■□□□□ 0.25
CLN3-248ENST00000636355 CFAP43Q8NDM7 1665 aa16.59■□□□□ 0.25
CLN3-248ENST00000636355 FMN1Q68DA7 1419 aa16.58■□□□□ 0.24
CLN3-248ENST00000636355 PCF11O94913 1555 aaKnown RBP16.57■□□□□ 0.24
CLN3-248ENST00000636355 KIAA0556O60303 1618 aa16.56■□□□□ 0.24
CLN3-248ENST00000636355 CASKIN1Q8WXD9 1431 aa16.52■□□□□ 0.23
CLN3-248ENST00000636355 TIAM1Q13009 1591 aa16.51■□□□□ 0.23
CLN3-248ENST00000636355 CHMP7Q8WUX9 453 aaPredicted RBP16.51■□□□□ 0.23
CLN3-248ENST00000636355 FHOD3Q2V2M9 1422 aa16.51■□□□□ 0.23
CLN3-248ENST00000636355 SHROOM2Q13796 1616 aa16.5■□□□□ 0.23
CLN3-248ENST00000636355 DISP1Q96F81 1524 aa16.49■□□□□ 0.23
CLN3-248ENST00000636355 HECW1Q76N89 1606 aa16.48■□□□□ 0.23
CLN3-248ENST00000636355 TRIM26Q12899 539 aaPredicted RBP16.47■□□□□ 0.23
CLN3-248ENST00000636355 CCDC18Q5T9S5 1454 aa16.44■□□□□ 0.22
CLN3-248ENST00000636355 APLP2Q06481 763 aa16.44■□□□□ 0.22
CLN3-248ENST00000636355 CLASP1Q7Z460 1538 aa16.44■□□□□ 0.22
CLN3-248ENST00000636355 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
CLN3-248ENST00000636355 RANGAP1P46060 587 aaPredicted RBP16.43■□□□□ 0.22
CLN3-248ENST00000636355 LRRIQ1Q96JM4 1722 aa16.4■□□□□ 0.22
CLN3-248ENST00000636355 RAPGEF6Q8TEU7 1601 aa16.38■□□□□ 0.21
CLN3-248ENST00000636355 LRRC9Q6ZRR7 1453 aa16.37■□□□□ 0.21
CLN3-248ENST00000636355 EHBP1L1Q8N3D4 1523 aa16.35■□□□□ 0.21
CLN3-248ENST00000636355 FBLN2P98095 1184 aa16.35■□□□□ 0.21
CLN3-248ENST00000636355 ABCA8O94911 1581 aa16.31■□□□□ 0.2
CLN3-248ENST00000636355 EPRSP07814 1512 aaKnown RBP16.3■□□□□ 0.2
CLN3-248ENST00000636355 JPH4Q96JJ6 628 aa16.3■□□□□ 0.2
CLN3-248ENST00000636355 SUPT6HQ7KZ85 1726 aaKnown RBP16.29■□□□□ 0.2
CLN3-248ENST00000636355 OSCARQ8IYS5 282 aa16.29■□□□□ 0.2
CLN3-248ENST00000636355 PRG4Q92954 1404 aaPredicted RBP16.28■□□□□ 0.2
CLN3-248ENST00000636355 P3H3Q8IVL6 736 aa16.28■□□□□ 0.2
CLN3-248ENST00000636355 PCGF6Q9BYE7 350 aa16.28■□□□□ 0.2
CLN3-248ENST00000636355 NUP153P49790 1475 aaKnown RBP16.28■□□□□ 0.2
CLN3-248ENST00000636355 RRBP1Q9P2E9 1410 aaKnown RBP16.28■□□□□ 0.2
CLN3-248ENST00000636355 ARHGEF11O15085 1522 aa16.24■□□□□ 0.19
CLN3-248ENST00000636355 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
CLN3-248ENST00000636355 MTUS2Q5JR59 1369 aa16.21■□□□□ 0.19
CLN3-248ENST00000636355 CDK13Q14004 1512 aaKnown RBP16.2■□□□□ 0.18
CLN3-248ENST00000636355 KANK4Q5T7N3 995 aaPredicted RBP16.2■□□□□ 0.18
CLN3-248ENST00000636355 PLB1Q6P1J6 1458 aa16.2■□□□□ 0.18
CLN3-248ENST00000636355 MAGI3Q5TCQ9 1506 aa16.19■□□□□ 0.18
CLN3-248ENST00000636355 PPARGC1BQ86YN6 1023 aaKnown RBP16.18■□□□□ 0.18
CLN3-248ENST00000636355 ABCC2Q92887 1545 aa16.18■□□□□ 0.18
CLN3-248ENST00000636355 PTPRGP23470 1445 aa16.18■□□□□ 0.18
CLN3-248ENST00000636355 UHRF1BP1LA0JNW5 1464 aa16.17■□□□□ 0.18
CLN3-248ENST00000636355 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLN3-248ENST00000636355 AEBP2Q6ZN18 517 aaPredicted RBP16.17■□□□□ 0.18
CLN3-248ENST00000636355 NCOA2Q15596 1464 aa16.16■□□□□ 0.18
CLN3-248ENST00000636355 CCNB3Q8WWL7 1395 aa16.15■□□□□ 0.18
CLN3-248ENST00000636355 ITSN2Q9NZM3 1697 aa16.15■□□□□ 0.18
CLN3-248ENST00000636355 ERCC6L2Q5T890 1561 aa16.15■□□□□ 0.18
CLN3-248ENST00000636355 UACAQ9BZF9 1416 aa16.14■□□□□ 0.17
CLN3-248ENST00000636355 MYOM3Q5VTT5 1437 aa16.13■□□□□ 0.17
CLN3-248ENST00000636355 KIF14Q15058 1648 aa16.12■□□□□ 0.17
CLN3-248ENST00000636355 TROQ12816 1431 aaPredicted RBP16.12■□□□□ 0.17
CLN3-248ENST00000636355 CDK11AQ9UQ88 783 aaPredicted RBP16.12■□□□□ 0.17
CLN3-248ENST00000636355 PHLDB1Q86UU1 1377 aa16.12■□□□□ 0.17
CLN3-248ENST00000636355 FGD6Q6ZV73 1430 aa16.11■□□□□ 0.17
CLN3-248ENST00000636355 ATP1B4Q9UN42 357 aaPredicted RBP16.11■□□□□ 0.17
CLN3-248ENST00000636355 TRHP20396 242 aaPredicted RBP16.1■□□□□ 0.17
CLN3-248ENST00000636355 TTBK1Q5TCY1 1321 aaPredicted RBP16.09■□□□□ 0.17
CLN3-248ENST00000636355 MIA2Q96PC5 1412 aa16.09■□□□□ 0.17
CLN3-248ENST00000636355 TCOF1Q13428 1488 aaKnown RBP16.08■□□□□ 0.16
CLN3-248ENST00000636355 ATP10BO94823 1461 aa16.07■□□□□ 0.16
CLN3-248ENST00000636355 PTPN23Q9H3S7 1636 aa16.06■□□□□ 0.16
CLN3-248ENST00000636355 KDM5BQ9UGL1 1544 aa16.06■□□□□ 0.16
CLN3-248ENST00000636355 ZCCHC11Q5TAX3 1644 aaKnown RBP16.05■□□□□ 0.16
CLN3-248ENST00000636355 RIMBP3CA6NJZ7 1639 aa16.05■□□□□ 0.16
CLN3-248ENST00000636355 RIMBP3BA6NNM3 1639 aa16.05■□□□□ 0.16
CLN3-248ENST00000636355 RIMBP3Q9UFD9 1639 aa16.05■□□□□ 0.16
CLN3-248ENST00000636355 CDC42BPAQ5VT25 1732 aa16.01■□□□□ 0.15
CLN3-248ENST00000636355 PREX2Q70Z35 1606 aa16■□□□□ 0.15
CLN3-248ENST00000636355 ABCC10Q5T3U5 1492 aa15.99■□□□□ 0.15
CLN3-248ENST00000636355 CYB5RLQ6IPT4 315 aa15.98■□□□□ 0.15
CLN3-248ENST00000636355 DNMT1P26358 1616 aaKnown RBP15.97■□□□□ 0.15
CLN3-248ENST00000636355 AKNAQ7Z591 1439 aa15.96■□□□□ 0.15
CLN3-248ENST00000636355 MYO5CQ9NQX4 1742 aa15.96■□□□□ 0.15
CLN3-248ENST00000636355 CROCC2H7BZ55 1655 aa15.95■□□□□ 0.14
CLN3-248ENST00000636355 PLEKHD1A6NEE1 506 aa15.94■□□□□ 0.14
CLN3-248ENST00000636355 GCC2Q8IWJ2 1684 aa15.94■□□□□ 0.14
CLN3-248ENST00000636355 ARAP3Q8WWN8 1544 aa15.94■□□□□ 0.14
CLN3-248ENST00000636355 GPATCH8Q9UKJ3 1502 aaKnown RBP15.93■□□□□ 0.14
CLN3-248ENST00000636355 TTC37Q6PGP7 1564 aa15.92■□□□□ 0.14
CLN3-248ENST00000636355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.91■□□□□ 0.14
CLN3-248ENST00000636355 HRCP23327 699 aa15.91■□□□□ 0.14
CLN3-248ENST00000636355 HNRNPUL2Q1KMD3 747 aaKnown RBP15.91■□□□□ 0.14
CLN3-248ENST00000636355 ADGBQ8N7X0 1667 aa15.91■□□□□ 0.14
CLN3-248ENST00000636355 CAMSAP2Q08AD1 1489 aa15.91■□□□□ 0.14
CLN3-248ENST00000636355 WDR7Q9Y4E6 1490 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms