RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 RIMBP3BA6NNM3 1639 aa23.57■■□□□ 1.36
LINC00339-208ENST00000634934 RIMBP3Q9UFD9 1639 aa23.57■■□□□ 1.36
LINC00339-208ENST00000634934 KIF21BO75037 1637 aa23.55■■□□□ 1.36
LINC00339-208ENST00000634934 ARHGEF11O15085 1522 aa23.55■■□□□ 1.36
LINC00339-208ENST00000634934 GOLGA3Q08378 1498 aa23.51■■□□□ 1.35
LINC00339-208ENST00000634934 UBTFP17480 764 aaKnown RBP23.49■■□□□ 1.35
LINC00339-208ENST00000634934 LOC105371045A0A1W2PR82 267 aa23.49■■□□□ 1.35
LINC00339-208ENST00000634934 SHROOM2Q13796 1616 aa23.43■■□□□ 1.34
LINC00339-208ENST00000634934 ERCC6L2Q5T890 1561 aa23.42■■□□□ 1.34
LINC00339-208ENST00000634934 KIAA0586Q9BVV6 1533 aa23.38■■□□□ 1.33
LINC00339-208ENST00000634934 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
LINC00339-208ENST00000634934 JPH4Q96JJ6 628 aa23.33■■□□□ 1.33
LINC00339-208ENST00000634934 CYB5RLQ6IPT4 315 aa23.32■■□□□ 1.32
LINC00339-208ENST00000634934 PRG4Q92954 1404 aaPredicted RBP23.32■■□□□ 1.32
LINC00339-208ENST00000634934 TNIKQ9UKE5 1360 aa23.31■■□□□ 1.32
LINC00339-208ENST00000634934 RANGAP1P46060 587 aaPredicted RBP23.31■■□□□ 1.32
LINC00339-208ENST00000634934 IQGAP2Q13576 1575 aa23.31■■□□□ 1.32
LINC00339-208ENST00000634934 CTTNBP2Q8WZ74 1663 aa23.31■■□□□ 1.32
LINC00339-208ENST00000634934 UGGT2Q9NYU1 1516 aa23.16■■□□□ 1.3
LINC00339-208ENST00000634934 DISP1Q96F81 1524 aa23.15■■□□□ 1.3
LINC00339-208ENST00000634934 CEP162Q5TB80 1403 aa23.14■■□□□ 1.3
LINC00339-208ENST00000634934 P3H3Q8IVL6 736 aa23.13■■□□□ 1.29
LINC00339-208ENST00000634934 CLIP1P30622 1438 aa23.12■■□□□ 1.29
LINC00339-208ENST00000634934 KIAA0556O60303 1618 aa23.1■■□□□ 1.29
LINC00339-208ENST00000634934 CARMIL2Q6F5E8 1435 aa23.1■■□□□ 1.29
LINC00339-208ENST00000634934 TTBK1Q5TCY1 1321 aaPredicted RBP23.09■■□□□ 1.29
LINC00339-208ENST00000634934 ARHGAP35Q9NRY4 1499 aa23.05■■□□□ 1.28
LINC00339-208ENST00000634934 EFCAB5A4FU69 1503 aa23.05■■□□□ 1.28
LINC00339-208ENST00000634934 SAMD9Q5K651 1589 aa23.05■■□□□ 1.28
LINC00339-208ENST00000634934 PTPRGP23470 1445 aa23.03■■□□□ 1.28
LINC00339-208ENST00000634934 FHOD3Q2V2M9 1422 aa23.02■■□□□ 1.28
LINC00339-208ENST00000634934 ADCY10Q96PN6 1610 aa23■■□□□ 1.27
LINC00339-208ENST00000634934 UACAQ9BZF9 1416 aa22.88■■□□□ 1.25
LINC00339-208ENST00000634934 PLB1Q6P1J6 1458 aa22.87■■□□□ 1.25
LINC00339-208ENST00000634934 FMN1Q68DA7 1419 aa22.87■■□□□ 1.25
LINC00339-208ENST00000634934 ABCC2Q92887 1545 aa22.86■■□□□ 1.25
LINC00339-208ENST00000634934 UHRF1BP1LA0JNW5 1464 aa22.83■■□□□ 1.25
LINC00339-208ENST00000634934 ABCA8O94911 1581 aa22.83■■□□□ 1.25
LINC00339-208ENST00000634934 ATP1B4Q9UN42 357 aaPredicted RBP22.82■■□□□ 1.24
LINC00339-208ENST00000634934 VPS8Q8N3P4 1428 aa22.82■■□□□ 1.24
LINC00339-208ENST00000634934 NPM1P06748 294 aaKnown RBP eCLIP22.8■■□□□ 1.24
LINC00339-208ENST00000634934 TRHP20396 242 aaPredicted RBP22.8■■□□□ 1.24
LINC00339-208ENST00000634934 ZCCHC11Q5TAX3 1644 aaKnown RBP22.77■■□□□ 1.24
LINC00339-208ENST00000634934 MAPKBP1O60336 1514 aa22.76■■□□□ 1.23
LINC00339-208ENST00000634934 CASKIN1Q8WXD9 1431 aa22.75■■□□□ 1.23
LINC00339-208ENST00000634934 KDM5BQ9UGL1 1544 aa22.75■■□□□ 1.23
LINC00339-208ENST00000634934 RAPGEF6Q8TEU7 1601 aa22.74■■□□□ 1.23
LINC00339-208ENST00000634934 ARID3CA6NKF2 412 aa22.74■■□□□ 1.23
LINC00339-208ENST00000634934 PCF11O94913 1555 aaKnown RBP22.73■■□□□ 1.23
LINC00339-208ENST00000634934 FYCO1Q9BQS8 1478 aa22.71■■□□□ 1.23
LINC00339-208ENST00000634934 KIF13AQ9H1H9 1805 aa22.7■■□□□ 1.23
LINC00339-208ENST00000634934 ASXL2Q76L83 1435 aa22.68■■□□□ 1.22
LINC00339-208ENST00000634934 NUP153P49790 1475 aaKnown RBP22.68■■□□□ 1.22
LINC00339-208ENST00000634934 HECW1Q76N89 1606 aa22.68■■□□□ 1.22
LINC00339-208ENST00000634934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.67■■□□□ 1.22
LINC00339-208ENST00000634934 HNRNPUL2Q1KMD3 747 aaKnown RBP22.67■■□□□ 1.22
LINC00339-208ENST00000634934 DIP2BQ9P265 1576 aa22.66■■□□□ 1.22
LINC00339-208ENST00000634934 ABCC10Q5T3U5 1492 aa22.64■■□□□ 1.22
LINC00339-208ENST00000634934 APLP2Q06481 763 aa22.64■■□□□ 1.21
LINC00339-208ENST00000634934 ATP10BO94823 1461 aa22.64■■□□□ 1.21
LINC00339-208ENST00000634934 EPRSP07814 1512 aaKnown RBP22.62■■□□□ 1.21
LINC00339-208ENST00000634934 CDK13Q14004 1512 aaKnown RBP22.61■■□□□ 1.21
LINC00339-208ENST00000634934 FAM69CQ0P6D2 419 aa22.6■■□□□ 1.21
LINC00339-208ENST00000634934 CCDC18Q5T9S5 1454 aa22.58■■□□□ 1.21
LINC00339-208ENST00000634934 WDR7Q9Y4E6 1490 aa22.57■■□□□ 1.2
LINC00339-208ENST00000634934 LRRIQ1Q96JM4 1722 aa22.56■■□□□ 1.2
LINC00339-208ENST00000634934 CDK11AQ9UQ88 783 aaPredicted RBP22.53■■□□□ 1.2
LINC00339-208ENST00000634934 TSPOAP1O95153 1857 aa22.52■■□□□ 1.2
LINC00339-208ENST00000634934 PLEKHD1A6NEE1 506 aa22.52■■□□□ 1.19
LINC00339-208ENST00000634934 TIAM1Q13009 1591 aa22.51■■□□□ 1.19
LINC00339-208ENST00000634934 GLI2P10070 1586 aa22.5■■□□□ 1.19
LINC00339-208ENST00000634934 KCNH8Q96L42 1107 aa22.5■■□□□ 1.19
LINC00339-208ENST00000634934 MAP3K1Q13233 1512 aa22.49■■□□□ 1.19
LINC00339-208ENST00000634934 CFAP43Q8NDM7 1665 aa22.48■■□□□ 1.19
LINC00339-208ENST00000634934 KANK4Q5T7N3 995 aaPredicted RBP22.47■■□□□ 1.19
LINC00339-208ENST00000634934 PPARGC1BQ86YN6 1023 aaKnown RBP22.47■■□□□ 1.19
LINC00339-208ENST00000634934 MTUS2Q5JR59 1369 aa22.47■■□□□ 1.19
LINC00339-208ENST00000634934 MAP3K4Q9Y6R4 1608 aa22.45■■□□□ 1.19
LINC00339-208ENST00000634934 PPRC1Q5VV67 1664 aaKnown RBP22.44■■□□□ 1.18
LINC00339-208ENST00000634934 LRRC9Q6ZRR7 1453 aa22.43■■□□□ 1.18
LINC00339-208ENST00000634934 MAGI3Q5TCQ9 1506 aa22.42■■□□□ 1.18
LINC00339-208ENST00000634934 TROQ12816 1431 aaPredicted RBP22.42■■□□□ 1.18
LINC00339-208ENST00000634934 EHBP1L1Q8N3D4 1523 aa22.38■■□□□ 1.17
LINC00339-208ENST00000634934 ABCA9Q8IUA7 1624 aa22.37■■□□□ 1.17
LINC00339-208ENST00000634934 CD109Q6YHK3 1445 aa22.34■■□□□ 1.17
LINC00339-208ENST00000634934 KIF14Q15058 1648 aa22.32■■□□□ 1.16
LINC00339-208ENST00000634934 TTC37Q6PGP7 1564 aa22.32■■□□□ 1.16
LINC00339-208ENST00000634934 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.32■■□□□ 1.16
LINC00339-208ENST00000634934 NCOA2Q15596 1464 aa22.28■■□□□ 1.16
LINC00339-208ENST00000634934 SUPT6HQ7KZ85 1726 aaKnown RBP22.28■■□□□ 1.16
LINC00339-208ENST00000634934 TEX14Q8IWB6 1497 aa22.27■■□□□ 1.16
LINC00339-208ENST00000634934 KDM6BO15054 1643 aa22.26■■□□□ 1.15
LINC00339-208ENST00000634934 CCNB3Q8WWL7 1395 aa22.24■■□□□ 1.15
LINC00339-208ENST00000634934 PHLDB1Q86UU1 1377 aa22.2■■□□□ 1.14
LINC00339-208ENST00000634934 COL17A1Q9UMD9 1497 aaPredicted RBP22.2■■□□□ 1.14
LINC00339-208ENST00000634934 MYO5CQ9NQX4 1742 aa22.2■■□□□ 1.14
LINC00339-208ENST00000634934 GPATCH8Q9UKJ3 1502 aaKnown RBP22.17■■□□□ 1.14
LINC00339-208ENST00000634934 MYOM3Q5VTT5 1437 aa22.15■■□□□ 1.14
LINC00339-208ENST00000634934 CFDP1Q9UEE9 299 aaPredicted RBP22.15■■□□□ 1.14
LINC00339-208ENST00000634934 FANCAO15360 1455 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 164.5 ms