RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 POLA1P09884 1462 aaPredicted RBP18.73■□□□□ 0.59
LINC00540-203ENST00000631321 RAD54L2Q9Y4B4 1467 aa18.71■□□□□ 0.59
LINC00540-203ENST00000631321 CFAP43Q8NDM7 1665 aa18.7■□□□□ 0.58
LINC00540-203ENST00000631321 EFCAB5A4FU69 1503 aa18.69■□□□□ 0.58
LINC00540-203ENST00000631321 CUL7Q14999 1698 aa18.68■□□□□ 0.58
LINC00540-203ENST00000631321 PCF11O94913 1555 aaKnown RBP18.67■□□□□ 0.58
LINC00540-203ENST00000631321 PHLDB1Q86UU1 1377 aa18.67■□□□□ 0.58
LINC00540-203ENST00000631321 AQRO60306 1485 aaKnown RBP eCLIP18.67■□□□□ 0.58
LINC00540-203ENST00000631321 RAB3GAP2Q9H2M9 1393 aa18.66■□□□□ 0.58
LINC00540-203ENST00000631321 FYCO1Q9BQS8 1478 aa18.65■□□□□ 0.58
LINC00540-203ENST00000631321 NESP48681 1621 aa18.65■□□□□ 0.58
LINC00540-203ENST00000631321 CASKIN1Q8WXD9 1431 aa18.63■□□□□ 0.57
LINC00540-203ENST00000631321 SETD5Q9C0A6 1442 aa18.63■□□□□ 0.57
LINC00540-203ENST00000631321 LAMC3Q9Y6N6 1575 aa18.63■□□□□ 0.57
LINC00540-203ENST00000631321 MAPKBP1O60336 1514 aa18.62■□□□□ 0.57
LINC00540-203ENST00000631321 FHOD3Q2V2M9 1422 aa18.61■□□□□ 0.57
LINC00540-203ENST00000631321 YTHDC1Q96MU7 727 aaKnown RBP18.61■□□□□ 0.57
LINC00540-203ENST00000631321 ITGAEP38570 1179 aa18.6■□□□□ 0.57
LINC00540-203ENST00000631321 WDR97A6NE52 1622 aa18.6■□□□□ 0.57
LINC00540-203ENST00000631321 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.59■□□□□ 0.57
LINC00540-203ENST00000631321 URB2Q14146 1524 aaKnown RBP18.59■□□□□ 0.57
LINC00540-203ENST00000631321 CTTNBP2Q8WZ74 1663 aa18.57■□□□□ 0.56
LINC00540-203ENST00000631321 P3H3Q8IVL6 736 aa18.56■□□□□ 0.56
LINC00540-203ENST00000631321 FMN1Q68DA7 1419 aa18.55■□□□□ 0.56
LINC00540-203ENST00000631321 ABCA5Q8WWZ7 1642 aa18.54■□□□□ 0.56
LINC00540-203ENST00000631321 SNAPC4Q5SXM2 1469 aa18.52■□□□□ 0.56
LINC00540-203ENST00000631321 FAM50AQ14320 339 aaKnown RBP18.51■□□□□ 0.55
LINC00540-203ENST00000631321 SAMD9Q5K651 1589 aa18.49■□□□□ 0.55
LINC00540-203ENST00000631321 PDS5BQ9NTI5 1447 aa18.49■□□□□ 0.55
LINC00540-203ENST00000631321 GAPVD1Q14C86 1478 aa18.47■□□□□ 0.55
LINC00540-203ENST00000631321 TIMELESSQ9UNS1 1208 aa18.47■□□□□ 0.55
LINC00540-203ENST00000631321 ATP1B4Q9UN42 357 aaPredicted RBP18.46■□□□□ 0.55
LINC00540-203ENST00000631321 TDRD9Q8NDG6 1382 aaKnown RBP18.45■□□□□ 0.54
LINC00540-203ENST00000631321 FGD6Q6ZV73 1430 aa18.45■□□□□ 0.54
LINC00540-203ENST00000631321 THOC2Q8NI27 1593 aaKnown RBP18.43■□□□□ 0.54
LINC00540-203ENST00000631321 GRIN2BQ13224 1484 aa18.42■□□□□ 0.54
LINC00540-203ENST00000631321 MTUS2Q5JR59 1369 aa18.39■□□□□ 0.53
LINC00540-203ENST00000631321 TARBP1Q13395 1621 aaKnown RBP18.37■□□□□ 0.53
LINC00540-203ENST00000631321 SIN3AQ96ST3 1273 aa18.37■□□□□ 0.53
LINC00540-203ENST00000631321 HFM1A2PYH4 1435 aa18.36■□□□□ 0.53
LINC00540-203ENST00000631321 NCOA2Q15596 1464 aa18.34■□□□□ 0.53
LINC00540-203ENST00000631321 LRRIQ1Q96JM4 1722 aa18.34■□□□□ 0.53
LINC00540-203ENST00000631321 EHBP1L1Q8N3D4 1523 aa18.34■□□□□ 0.53
LINC00540-203ENST00000631321 KIF21AQ7Z4S6 1674 aa18.34■□□□□ 0.53
LINC00540-203ENST00000631321 MYOM3Q5VTT5 1437 aa18.34■□□□□ 0.53
LINC00540-203ENST00000631321 PTPRKQ15262 1439 aa18.33■□□□□ 0.52
LINC00540-203ENST00000631321 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
LINC00540-203ENST00000631321 CCDC18Q5T9S5 1454 aa18.31■□□□□ 0.52
LINC00540-203ENST00000631321 UACAQ9BZF9 1416 aa18.3■□□□□ 0.52
LINC00540-203ENST00000631321 PPP1R15AO75807 674 aaPredicted RBP18.3■□□□□ 0.52
LINC00540-203ENST00000631321 DNAJC5BQ9UF47 199 aa18.3■□□□□ 0.52
LINC00540-203ENST00000631321 SUPT6HQ7KZ85 1726 aaKnown RBP18.3■□□□□ 0.52
LINC00540-203ENST00000631321 PTPN23Q9H3S7 1636 aa18.3■□□□□ 0.52
LINC00540-203ENST00000631321 UGGT2Q9NYU1 1516 aa18.29■□□□□ 0.52
LINC00540-203ENST00000631321 NAIPQ13075 1403 aa18.27■□□□□ 0.52
LINC00540-203ENST00000631321 TCOF1Q13428 1488 aaKnown RBP18.24■□□□□ 0.51
LINC00540-203ENST00000631321 MAGI3Q5TCQ9 1506 aa18.24■□□□□ 0.51
LINC00540-203ENST00000631321 PBRM1Q86U86 1689 aa18.24■□□□□ 0.51
LINC00540-203ENST00000631321 ADAMTS12P58397 1594 aa18.24■□□□□ 0.51
LINC00540-203ENST00000631321 HECW1Q76N89 1606 aa18.23■□□□□ 0.51
LINC00540-203ENST00000631321 IQGAP2Q13576 1575 aa18.23■□□□□ 0.51
LINC00540-203ENST00000631321 MRC2Q9UBG0 1479 aa18.21■□□□□ 0.51
LINC00540-203ENST00000631321 AKNAQ7Z591 1439 aa18.19■□□□□ 0.5
LINC00540-203ENST00000631321 TONSLQ96HA7 1378 aa18.19■□□□□ 0.5
LINC00540-203ENST00000631321 DDX10Q13206 875 aaKnown RBP18.18■□□□□ 0.5
LINC00540-203ENST00000631321 EPRSP07814 1512 aaKnown RBP18.18■□□□□ 0.5
LINC00540-203ENST00000631321 SUPT16HQ9Y5B9 1047 aaKnown RBP18.16■□□□□ 0.5
LINC00540-203ENST00000631321 WDR62O43379 1518 aa18.16■□□□□ 0.5
LINC00540-203ENST00000631321 MIA2Q96PC5 1412 aa18.16■□□□□ 0.5
LINC00540-203ENST00000631321 KCNH8Q96L42 1107 aa18.15■□□□□ 0.5
LINC00540-203ENST00000631321 KDM5BQ9UGL1 1544 aa18.14■□□□□ 0.49
LINC00540-203ENST00000631321 GCC2Q8IWJ2 1684 aa18.13■□□□□ 0.49
LINC00540-203ENST00000631321 IFT140Q96RY7 1462 aa18.12■□□□□ 0.49
LINC00540-203ENST00000631321 CCER2I3L3R5 266 aa18.11■□□□□ 0.49
LINC00540-203ENST00000631321 CDK13Q14004 1512 aaKnown RBP18.09■□□□□ 0.49
LINC00540-203ENST00000631321 KIAA0586Q9BVV6 1533 aa18.08■□□□□ 0.48
LINC00540-203ENST00000631321 DENND4BO75064 1496 aaPredicted RBP18.08■□□□□ 0.48
LINC00540-203ENST00000631321 RRP7BPQ9NSQ0 103 aa18.06■□□□□ 0.48
LINC00540-203ENST00000631321 ZNF608Q9ULD9 1512 aaPredicted RBP18.05■□□□□ 0.48
LINC00540-203ENST00000631321 HIRIP3Q9BW71 556 aaPredicted RBP18.05■□□□□ 0.48
LINC00540-203ENST00000631321 DISP1Q96F81 1524 aa18.04■□□□□ 0.48
LINC00540-203ENST00000631321 ANP32CO43423 234 aa18.04■□□□□ 0.48
LINC00540-203ENST00000631321 KIAA0556O60303 1618 aa18.04■□□□□ 0.48
LINC00540-203ENST00000631321 ROCK1Q13464 1354 aa18.03■□□□□ 0.48
LINC00540-203ENST00000631321 KDM6BO15054 1643 aa18.02■□□□□ 0.48
LINC00540-203ENST00000631321 CHIC2Q9UKJ5 165 aa18.02■□□□□ 0.47
LINC00540-203ENST00000631321 NUP153P49790 1475 aaKnown RBP18■□□□□ 0.47
LINC00540-203ENST00000631321 GRIN2AQ12879 1464 aa17.99■□□□□ 0.47
LINC00540-203ENST00000631321 DAPK1P53355 1430 aa17.98■□□□□ 0.47
LINC00540-203ENST00000631321 MPHOSPH9Q99550 1183 aa17.97■□□□□ 0.47
LINC00540-203ENST00000631321 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
LINC00540-203ENST00000631321 DNMT1P26358 1616 aaKnown RBP17.96■□□□□ 0.47
LINC00540-203ENST00000631321 RAPGEF6Q8TEU7 1601 aa17.96■□□□□ 0.47
LINC00540-203ENST00000631321 ABCC5O15440 1437 aa17.96■□□□□ 0.47
LINC00540-203ENST00000631321 EIF4G3O43432 1585 aaKnown RBP17.94■□□□□ 0.46
LINC00540-203ENST00000631321 CDK11AQ9UQ88 783 aaPredicted RBP17.92■□□□□ 0.46
LINC00540-203ENST00000631321 MAGI1Q96QZ7 1491 aaPredicted RBP17.92■□□□□ 0.46
LINC00540-203ENST00000631321 ANKRD30BQ9BXX2 1392 aa17.91■□□□□ 0.46
LINC00540-203ENST00000631321 ARID3CA6NKF2 412 aa17.91■□□□□ 0.46
LINC00540-203ENST00000631321 HSPA5P11021 654 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms