RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 GRIN2AQ12879 1464 aa17.15■□□□□ 0.34
CPNE3-212ENST00000621783 CLIP1P30622 1438 aa17.09■□□□□ 0.33
CPNE3-212ENST00000621783 CHD1O14646 1710 aa17.09■□□□□ 0.33
CPNE3-212ENST00000621783 CEP170Q5SW79 1584 aa17.07■□□□□ 0.32
CPNE3-212ENST00000621783 CHMP7Q8WUX9 453 aaPredicted RBP17.05■□□□□ 0.32
CPNE3-212ENST00000621783 IQGAP2Q13576 1575 aa17.04■□□□□ 0.32
CPNE3-212ENST00000621783 NUP160Q12769 1436 aa17.04■□□□□ 0.32
CPNE3-212ENST00000621783 ARHGAP35Q9NRY4 1499 aa17.02■□□□□ 0.32
CPNE3-212ENST00000621783 FBLN2P98095 1184 aa17.01■□□□□ 0.31
CPNE3-212ENST00000621783 EFCAB5A4FU69 1503 aa17.01■□□□□ 0.31
CPNE3-212ENST00000621783 RANGAP1P46060 587 aaPredicted RBP17■□□□□ 0.31
CPNE3-212ENST00000621783 KIAA0586Q9BVV6 1533 aa17■□□□□ 0.31
CPNE3-212ENST00000621783 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
CPNE3-212ENST00000621783 SAMD9Q5K651 1589 aa16.98■□□□□ 0.31
CPNE3-212ENST00000621783 UGGT2Q9NYU1 1516 aa16.96■□□□□ 0.3
CPNE3-212ENST00000621783 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
CPNE3-212ENST00000621783 CLASP1Q7Z460 1538 aa16.9■□□□□ 0.3
CPNE3-212ENST00000621783 KIAA0556O60303 1618 aa16.89■□□□□ 0.29
CPNE3-212ENST00000621783 FHOD3Q2V2M9 1422 aa16.89■□□□□ 0.29
CPNE3-212ENST00000621783 SHROOM2Q13796 1616 aa16.87■□□□□ 0.29
CPNE3-212ENST00000621783 DISP1Q96F81 1524 aa16.86■□□□□ 0.29
CPNE3-212ENST00000621783 P3H3Q8IVL6 736 aa16.84■□□□□ 0.29
CPNE3-212ENST00000621783 PCF11O94913 1555 aaKnown RBP16.83■□□□□ 0.28
CPNE3-212ENST00000621783 FMN1Q68DA7 1419 aa16.79■□□□□ 0.28
CPNE3-212ENST00000621783 JPH4Q96JJ6 628 aa16.79■□□□□ 0.28
CPNE3-212ENST00000621783 CARMIL2Q6F5E8 1435 aa16.78■□□□□ 0.28
CPNE3-212ENST00000621783 PRG4Q92954 1404 aaPredicted RBP16.77■□□□□ 0.27
CPNE3-212ENST00000621783 FYCO1Q9BQS8 1478 aa16.76■□□□□ 0.27
CPNE3-212ENST00000621783 CASKIN1Q8WXD9 1431 aa16.75■□□□□ 0.27
CPNE3-212ENST00000621783 ERCC6L2Q5T890 1561 aa16.73■□□□□ 0.27
CPNE3-212ENST00000621783 CFAP43Q8NDM7 1665 aa16.72■□□□□ 0.27
CPNE3-212ENST00000621783 HECW1Q76N89 1606 aa16.7■□□□□ 0.26
CPNE3-212ENST00000621783 TIAM1Q13009 1591 aa16.69■□□□□ 0.26
CPNE3-212ENST00000621783 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
CPNE3-212ENST00000621783 LRRIQ1Q96JM4 1722 aa16.69■□□□□ 0.26
CPNE3-212ENST00000621783 RAPGEF6Q8TEU7 1601 aa16.69■□□□□ 0.26
CPNE3-212ENST00000621783 MAP3K1Q13233 1512 aa16.68■□□□□ 0.26
CPNE3-212ENST00000621783 ABCA8O94911 1581 aa16.65■□□□□ 0.26
CPNE3-212ENST00000621783 APLP2Q06481 763 aa16.65■□□□□ 0.26
CPNE3-212ENST00000621783 TTBK1Q5TCY1 1321 aaPredicted RBP16.65■□□□□ 0.26
CPNE3-212ENST00000621783 PLB1Q6P1J6 1458 aa16.64■□□□□ 0.25
CPNE3-212ENST00000621783 CCDC18Q5T9S5 1454 aa16.63■□□□□ 0.25
CPNE3-212ENST00000621783 PPARGC1BQ86YN6 1023 aaKnown RBP16.63■□□□□ 0.25
CPNE3-212ENST00000621783 PTPRGP23470 1445 aa16.62■□□□□ 0.25
CPNE3-212ENST00000621783 NUP153P49790 1475 aaKnown RBP16.61■□□□□ 0.25
CPNE3-212ENST00000621783 ATP1B4Q9UN42 357 aaPredicted RBP16.61■□□□□ 0.25
CPNE3-212ENST00000621783 EPRSP07814 1512 aaKnown RBP16.6■□□□□ 0.25
CPNE3-212ENST00000621783 CDK13Q14004 1512 aaKnown RBP16.6■□□□□ 0.25
CPNE3-212ENST00000621783 LRRC9Q6ZRR7 1453 aa16.58■□□□□ 0.24
CPNE3-212ENST00000621783 KANK4Q5T7N3 995 aaPredicted RBP16.56■□□□□ 0.24
CPNE3-212ENST00000621783 ABCC2Q92887 1545 aa16.55■□□□□ 0.24
CPNE3-212ENST00000621783 UACAQ9BZF9 1416 aa16.55■□□□□ 0.24
CPNE3-212ENST00000621783 EHBP1L1Q8N3D4 1523 aa16.55■□□□□ 0.24
CPNE3-212ENST00000621783 MAGI3Q5TCQ9 1506 aa16.53■□□□□ 0.24
CPNE3-212ENST00000621783 ARHGEF11O15085 1522 aa16.52■□□□□ 0.24
CPNE3-212ENST00000621783 UHRF1BP1LA0JNW5 1464 aa16.51■□□□□ 0.23
CPNE3-212ENST00000621783 ARID3CA6NKF2 412 aa16.5■□□□□ 0.23
CPNE3-212ENST00000621783 MTUS2Q5JR59 1369 aa16.49■□□□□ 0.23
CPNE3-212ENST00000621783 ATP10BO94823 1461 aa16.48■□□□□ 0.23
CPNE3-212ENST00000621783 RIMBP3CA6NJZ7 1639 aa16.48■□□□□ 0.23
CPNE3-212ENST00000621783 RIMBP3BA6NNM3 1639 aa16.48■□□□□ 0.23
CPNE3-212ENST00000621783 ADCY10Q96PN6 1610 aa16.48■□□□□ 0.23
CPNE3-212ENST00000621783 RIMBP3Q9UFD9 1639 aa16.48■□□□□ 0.23
CPNE3-212ENST00000621783 TRIM26Q12899 539 aaPredicted RBP16.47■□□□□ 0.23
CPNE3-212ENST00000621783 SUPT6HQ7KZ85 1726 aaKnown RBP16.47■□□□□ 0.23
CPNE3-212ENST00000621783 ZCCHC11Q5TAX3 1644 aaKnown RBP16.45■□□□□ 0.22
CPNE3-212ENST00000621783 KDM5BQ9UGL1 1544 aa16.43■□□□□ 0.22
CPNE3-212ENST00000621783 TROQ12816 1431 aaPredicted RBP16.43■□□□□ 0.22
CPNE3-212ENST00000621783 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
CPNE3-212ENST00000621783 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.41■□□□□ 0.22
CPNE3-212ENST00000621783 HNRNPUL2Q1KMD3 747 aaKnown RBP16.41■□□□□ 0.22
CPNE3-212ENST00000621783 PHLDB1Q86UU1 1377 aa16.4■□□□□ 0.22
CPNE3-212ENST00000621783 KIF14Q15058 1648 aa16.39■□□□□ 0.21
CPNE3-212ENST00000621783 CDK11AQ9UQ88 783 aaPredicted RBP16.39■□□□□ 0.21
CPNE3-212ENST00000621783 RRBP1Q9P2E9 1410 aaKnown RBP16.38■□□□□ 0.21
CPNE3-212ENST00000621783 PCGF6Q9BYE7 350 aa16.38■□□□□ 0.21
CPNE3-212ENST00000621783 FOXD1Q16676 465 aa16.36■□□□□ 0.21
CPNE3-212ENST00000621783 MYOM3Q5VTT5 1437 aa16.34■□□□□ 0.21
CPNE3-212ENST00000621783 PLEKHD1A6NEE1 506 aa16.32■□□□□ 0.2
CPNE3-212ENST00000621783 CCNB3Q8WWL7 1395 aa16.32■□□□□ 0.2
CPNE3-212ENST00000621783 ITSN2Q9NZM3 1697 aa16.32■□□□□ 0.2
CPNE3-212ENST00000621783 ABCC10Q5T3U5 1492 aa16.31■□□□□ 0.2
CPNE3-212ENST00000621783 FGD6Q6ZV73 1430 aa16.31■□□□□ 0.2
CPNE3-212ENST00000621783 WDR7Q9Y4E6 1490 aa16.29■□□□□ 0.2
CPNE3-212ENST00000621783 PTPN23Q9H3S7 1636 aa16.28■□□□□ 0.2
CPNE3-212ENST00000621783 TTC37Q6PGP7 1564 aa16.28■□□□□ 0.2
CPNE3-212ENST00000621783 CDC42BPAQ5VT25 1732 aa16.28■□□□□ 0.2
CPNE3-212ENST00000621783 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.26■□□□□ 0.19
CPNE3-212ENST00000621783 CYB5RLQ6IPT4 315 aa16.26■□□□□ 0.19
CPNE3-212ENST00000621783 ASXL2Q76L83 1435 aa16.26■□□□□ 0.19
CPNE3-212ENST00000621783 MIA2Q96PC5 1412 aa16.26■□□□□ 0.19
CPNE3-212ENST00000621783 GPATCH8Q9UKJ3 1502 aaKnown RBP16.25■□□□□ 0.19
CPNE3-212ENST00000621783 TCOF1Q13428 1488 aaKnown RBP16.25■□□□□ 0.19
CPNE3-212ENST00000621783 PREX2Q70Z35 1606 aa16.25■□□□□ 0.19
CPNE3-212ENST00000621783 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.24■□□□□ 0.19
CPNE3-212ENST00000621783 MAPKBP1O60336 1514 aa16.23■□□□□ 0.19
CPNE3-212ENST00000621783 MYO5CQ9NQX4 1742 aa16.22■□□□□ 0.19
CPNE3-212ENST00000621783 NPM1P06748 294 aaKnown RBP eCLIP16.22■□□□□ 0.19
CPNE3-212ENST00000621783 ABCA9Q8IUA7 1624 aa16.2■□□□□ 0.18
CPNE3-212ENST00000621783 FAM50AQ14320 339 aaKnown RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms