RNA–Protein interactions for RNA: ENST00000618999.4

SRGAP3-213, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 5 BASIC

Gene SRGAP3, Length 3,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-213ENST00000618999 KIF21AQ7Z4S6 1674 aa10.53□□□□□ -0.72
SRGAP3-213ENST00000618999 CARMIL1Q5VZK9 1371 aa10.52□□□□□ -0.72
SRGAP3-213ENST00000618999 MRC2Q9UBG0 1479 aa10.52□□□□□ -0.72
SRGAP3-213ENST00000618999 TTBK1Q5TCY1 1321 aaPredicted RBP10.52□□□□□ -0.73
SRGAP3-213ENST00000618999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.49□□□□□ -0.73
SRGAP3-213ENST00000618999 MYT1Q01538 1121 aa10.49□□□□□ -0.73
SRGAP3-213ENST00000618999 PRXQ9BXM0 1461 aa10.49□□□□□ -0.73
SRGAP3-213ENST00000618999 ABCA10Q8WWZ4 1543 aa10.49□□□□□ -0.73
SRGAP3-213ENST00000618999 KIF21BO75037 1637 aa10.48□□□□□ -0.73
SRGAP3-213ENST00000618999 APLP2Q06481 763 aa10.48□□□□□ -0.73
SRGAP3-213ENST00000618999 CLIP1P30622 1438 aa10.48□□□□□ -0.73
SRGAP3-213ENST00000618999 ACIN1Q9UKV3 1341 aaKnown RBP10.47□□□□□ -0.73
SRGAP3-213ENST00000618999 GAPVD1Q14C86 1478 aa10.45□□□□□ -0.74
SRGAP3-213ENST00000618999 DIEXFQ68CQ4 756 aaKnown RBP10.45□□□□□ -0.74
SRGAP3-213ENST00000618999 AQRO60306 1485 aaKnown RBP eCLIP10.44□□□□□ -0.74
SRGAP3-213ENST00000618999 FBLN2P98095 1184 aa10.43□□□□□ -0.74
SRGAP3-213ENST00000618999 P3H3Q8IVL6 736 aa10.43□□□□□ -0.74
SRGAP3-213ENST00000618999 TULP1O00294 542 aaPredicted RBP10.43□□□□□ -0.74
SRGAP3-213ENST00000618999 ERICH3Q5RHP9 1530 aa10.43□□□□□ -0.74
SRGAP3-213ENST00000618999 ATP1B4Q9UN42 357 aaPredicted RBP10.41□□□□□ -0.74
SRGAP3-213ENST00000618999 IFT140Q96RY7 1462 aa10.4□□□□□ -0.74
SRGAP3-213ENST00000618999 GTF3C3Q9Y5Q9 886 aa10.4□□□□□ -0.74
SRGAP3-213ENST00000618999 TAOK2Q9UL54 1235 aa10.4□□□□□ -0.74
SRGAP3-213ENST00000618999 WDR62O43379 1518 aa10.39□□□□□ -0.75
SRGAP3-213ENST00000618999 ZNF608Q9ULD9 1512 aaPredicted RBP10.38□□□□□ -0.75
SRGAP3-213ENST00000618999 NEUROD1Q13562 356 aa10.38□□□□□ -0.75
SRGAP3-213ENST00000618999 CHMP7Q8WUX9 453 aaPredicted RBP10.38□□□□□ -0.75
SRGAP3-213ENST00000618999 BCANQ96GW7 911 aa10.37□□□□□ -0.75
SRGAP3-213ENST00000618999 TARBP1Q13395 1621 aaKnown RBP10.36□□□□□ -0.75
SRGAP3-213ENST00000618999 GRIN2BQ13224 1484 aa10.35□□□□□ -0.75
SRGAP3-213ENST00000618999 FOXD1Q16676 465 aa10.35□□□□□ -0.75
SRGAP3-213ENST00000618999 YTHDC1Q96MU7 727 aaKnown RBP10.34□□□□□ -0.75
SRGAP3-213ENST00000618999 VPS8Q8N3P4 1428 aa10.34□□□□□ -0.75
SRGAP3-213ENST00000618999 FHAD1B1AJZ9 1412 aa10.33□□□□□ -0.76
SRGAP3-213ENST00000618999 ABCA5Q8WWZ7 1642 aa10.33□□□□□ -0.76
SRGAP3-213ENST00000618999 THOC2Q8NI27 1593 aaKnown RBP10.32□□□□□ -0.76
SRGAP3-213ENST00000618999 CUL7Q14999 1698 aa10.31□□□□□ -0.76
SRGAP3-213ENST00000618999 TIMELESSQ9UNS1 1208 aa10.31□□□□□ -0.76
SRGAP3-213ENST00000618999 WDR97A6NE52 1622 aa10.31□□□□□ -0.76
SRGAP3-213ENST00000618999 PLCB2Q00722 1185 aa10.3□□□□□ -0.76
SRGAP3-213ENST00000618999 PIAS4Q8N2W9 510 aaPredicted RBP10.3□□□□□ -0.76
SRGAP3-213ENST00000618999 FOXD4L1Q9NU39 408 aa10.3□□□□□ -0.76
SRGAP3-213ENST00000618999 SNAPC4Q5SXM2 1469 aa10.29□□□□□ -0.76
SRGAP3-213ENST00000618999 ARAP1Q96P48 1450 aa10.29□□□□□ -0.76
SRGAP3-213ENST00000618999 ARHGAP35Q9NRY4 1499 aa10.29□□□□□ -0.76
SRGAP3-213ENST00000618999 ZNF316A6NFI3 1004 aaPredicted RBP10.27□□□□□ -0.77
SRGAP3-213ENST00000618999 FHOD3Q2V2M9 1422 aa10.27□□□□□ -0.77
SRGAP3-213ENST00000618999 DAXXQ9UER7 740 aaPredicted RBP10.26□□□□□ -0.77
SRGAP3-213ENST00000618999 EIF4G3O43432 1585 aaKnown RBP10.25□□□□□ -0.77
SRGAP3-213ENST00000618999 PBRM1Q86U86 1689 aa10.24□□□□□ -0.77
SRGAP3-213ENST00000618999 KANK4Q5T7N3 995 aaPredicted RBP10.23□□□□□ -0.77
SRGAP3-213ENST00000618999 ARID3CA6NKF2 412 aa10.23□□□□□ -0.77
SRGAP3-213ENST00000618999 ADAMTS12P58397 1594 aa10.22□□□□□ -0.77
SRGAP3-213ENST00000618999 MAGI1Q96QZ7 1491 aaPredicted RBP10.22□□□□□ -0.77
SRGAP3-213ENST00000618999 GRIN2AQ12879 1464 aa10.21□□□□□ -0.78
SRGAP3-213ENST00000618999 HNRNPUL2Q1KMD3 747 aaKnown RBP10.21□□□□□ -0.78
SRGAP3-213ENST00000618999 SYNJ2O15056 1496 aa10.2□□□□□ -0.78
SRGAP3-213ENST00000618999 JPH4Q96JJ6 628 aa10.2□□□□□ -0.78
SRGAP3-213ENST00000618999 FMN1Q68DA7 1419 aa10.18□□□□□ -0.78
SRGAP3-213ENST00000618999 EFCAB5A4FU69 1503 aa10.18□□□□□ -0.78
SRGAP3-213ENST00000618999 KIAA0586Q9BVV6 1533 aa10.17□□□□□ -0.78
SRGAP3-213ENST00000618999 CTTNBP2Q8WZ74 1663 aa10.17□□□□□ -0.78
SRGAP3-213ENST00000618999 IQGAP2Q13576 1575 aa10.17□□□□□ -0.78
SRGAP3-213ENST00000618999 ITGAEP38570 1179 aa10.16□□□□□ -0.78
SRGAP3-213ENST00000618999 MTUS2Q5JR59 1369 aa10.13□□□□□ -0.79
SRGAP3-213ENST00000618999 CARMIL2Q6F5E8 1435 aa10.13□□□□□ -0.79
SRGAP3-213ENST00000618999 CASKIN1Q8WXD9 1431 aa10.13□□□□□ -0.79
SRGAP3-213ENST00000618999 CFAP44Q96MT7 982 aa10.12□□□□□ -0.79
SRGAP3-213ENST00000618999 FAM50AQ14320 339 aaKnown RBP10.12□□□□□ -0.79
SRGAP3-213ENST00000618999 NUP160Q12769 1436 aa10.1□□□□□ -0.79
SRGAP3-213ENST00000618999 MIER1Q8N108 512 aa10.1□□□□□ -0.79
SRGAP3-213ENST00000618999 PCF11O94913 1555 aaKnown RBP10.1□□□□□ -0.79
SRGAP3-213ENST00000618999 FYCO1Q9BQS8 1478 aa10.1□□□□□ -0.79
SRGAP3-213ENST00000618999 CEP170Q5SW79 1584 aa10.09□□□□□ -0.79
SRGAP3-213ENST00000618999 UGGT2Q9NYU1 1516 aa10.08□□□□□ -0.8
SRGAP3-213ENST00000618999 CDK11AQ9UQ88 783 aaPredicted RBP10.08□□□□□ -0.8
SRGAP3-213ENST00000618999 SAMD9Q5K651 1589 aa10.08□□□□□ -0.8
SRGAP3-213ENST00000618999 LRRC9Q6ZRR7 1453 aa10.07□□□□□ -0.8
SRGAP3-213ENST00000618999 TIAM1Q13009 1591 aa10.07□□□□□ -0.8
SRGAP3-213ENST00000618999 PRG4Q92954 1404 aaPredicted RBP10.07□□□□□ -0.8
SRGAP3-213ENST00000618999 DISP1Q96F81 1524 aa10.06□□□□□ -0.8
SRGAP3-213ENST00000618999 CCNB3Q8WWL7 1395 aa10.05□□□□□ -0.8
SRGAP3-213ENST00000618999 PTPRGP23470 1445 aa10.04□□□□□ -0.8
SRGAP3-213ENST00000618999 MAP3K1Q13233 1512 aa10.04□□□□□ -0.8
SRGAP3-213ENST00000618999 KIAA0556O60303 1618 aa10.03□□□□□ -0.8
SRGAP3-213ENST00000618999 OSCARQ8IYS5 282 aa10.03□□□□□ -0.8
SRGAP3-213ENST00000618999 CLSPNQ9HAW4 1339 aa10.03□□□□□ -0.8
SRGAP3-213ENST00000618999 PHLDB1Q86UU1 1377 aa10.03□□□□□ -0.8
SRGAP3-213ENST00000618999 PLEKHD1A6NEE1 506 aa10.02□□□□□ -0.81
SRGAP3-213ENST00000618999 PLB1Q6P1J6 1458 aa10.02□□□□□ -0.81
SRGAP3-213ENST00000618999 CHD1O14646 1710 aa10.01□□□□□ -0.81
SRGAP3-213ENST00000618999 EPRSP07814 1512 aaKnown RBP10.01□□□□□ -0.81
SRGAP3-213ENST00000618999 CCDC18Q5T9S5 1454 aa10□□□□□ -0.81
SRGAP3-213ENST00000618999 CDK13Q14004 1512 aaKnown RBP10□□□□□ -0.81
SRGAP3-213ENST00000618999 HECW1Q76N89 1606 aa9.99□□□□□ -0.81
SRGAP3-213ENST00000618999 RRBP1Q9P2E9 1410 aaKnown RBP9.99□□□□□ -0.81
SRGAP3-213ENST00000618999 PAXIP1Q6ZW49 1069 aaPredicted RBP9.98□□□□□ -0.81
SRGAP3-213ENST00000618999 ZNF777Q9ULD5 760 aaPredicted RBP9.98□□□□□ -0.81
SRGAP3-213ENST00000618999 NCOA2Q15596 1464 aa9.97□□□□□ -0.81
SRGAP3-213ENST00000618999 PODXL2Q9NZ53 605 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms