RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 HMGXB3Q12766 1538 aa19.45■□□□□ 0.7
CIITA-213ENST00000618327 ANP32CO43423 234 aa19.44■□□□□ 0.7
CIITA-213ENST00000618327 CC2D2AQ9P2K1 1620 aa19.43■□□□□ 0.7
CIITA-213ENST00000618327 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.42■□□□□ 0.7
CIITA-213ENST00000618327 CFTRP13569 1480 aa19.41■□□□□ 0.7
CIITA-213ENST00000618327 FGD5Q6ZNL6 1462 aa19.41■□□□□ 0.7
CIITA-213ENST00000618327 CCNB3Q8WWL7 1395 aa19.38■□□□□ 0.69
CIITA-213ENST00000618327 KANK4Q5T7N3 995 aaPredicted RBP19.37■□□□□ 0.69
CIITA-213ENST00000618327 FMN1Q68DA7 1419 aa19.35■□□□□ 0.69
CIITA-213ENST00000618327 DAXXQ9UER7 740 aaPredicted RBP19.35■□□□□ 0.69
CIITA-213ENST00000618327 CARMIL2Q6F5E8 1435 aa19.35■□□□□ 0.69
CIITA-213ENST00000618327 IGF1RP08069 1367 aa19.33■□□□□ 0.68
CIITA-213ENST00000618327 ESF1Q9H501 851 aaKnown RBP19.33■□□□□ 0.68
CIITA-213ENST00000618327 UNC13AQ9UPW8 1703 aa19.32■□□□□ 0.68
CIITA-213ENST00000618327 RAD54L2Q9Y4B4 1467 aa19.32■□□□□ 0.68
CIITA-213ENST00000618327 CHGAP10645 457 aaKnown RBP19.3■□□□□ 0.68
CIITA-213ENST00000618327 FHOD3Q2V2M9 1422 aa19.29■□□□□ 0.68
CIITA-213ENST00000618327 ACIN1Q9UKV3 1341 aaKnown RBP19.28■□□□□ 0.68
CIITA-213ENST00000618327 NESP48681 1621 aa19.28■□□□□ 0.68
CIITA-213ENST00000618327 GAPVD1Q14C86 1478 aa19.26■□□□□ 0.67
CIITA-213ENST00000618327 SYNJ1O43426 1573 aa19.26■□□□□ 0.67
CIITA-213ENST00000618327 BCANQ96GW7 911 aa19.25■□□□□ 0.67
CIITA-213ENST00000618327 ARHGAP35Q9NRY4 1499 aa19.24■□□□□ 0.67
CIITA-213ENST00000618327 JPH4Q96JJ6 628 aa19.21■□□□□ 0.67
CIITA-213ENST00000618327 STAG3Q9UJ98 1225 aa19.21■□□□□ 0.67
CIITA-213ENST00000618327 KDM2AQ9Y2K7 1162 aa19.19■□□□□ 0.66
CIITA-213ENST00000618327 PEG3Q9GZU2 1588 aa19.19■□□□□ 0.66
CIITA-213ENST00000618327 DDX10Q13206 875 aaKnown RBP19.19■□□□□ 0.66
CIITA-213ENST00000618327 CLSPNQ9HAW4 1339 aa19.15■□□□□ 0.66
CIITA-213ENST00000618327 TOP2BQ02880 1626 aa19.15■□□□□ 0.66
CIITA-213ENST00000618327 CUX1P39880 1505 aa19.14■□□□□ 0.65
CIITA-213ENST00000618327 AQRO60306 1485 aaKnown RBP eCLIP19.13■□□□□ 0.65
CIITA-213ENST00000618327 TOPBP1Q92547 1522 aa19.11■□□□□ 0.65
CIITA-213ENST00000618327 RTL5Q5HYW3 569 aaPredicted RBP19.1■□□□□ 0.65
CIITA-213ENST00000618327 SIN3AQ96ST3 1273 aa19.1■□□□□ 0.65
CIITA-213ENST00000618327 SETD5Q9C0A6 1442 aa19.1■□□□□ 0.65
CIITA-213ENST00000618327 HIRIP3Q9BW71 556 aaPredicted RBP19.09■□□□□ 0.65
CIITA-213ENST00000618327 PLPPR3Q6T4P5 718 aa19.08■□□□□ 0.64
CIITA-213ENST00000618327 EIF4G2P78344 907 aaKnown RBP eCLIP19.07■□□□□ 0.64
CIITA-213ENST00000618327 MRC2Q9UBG0 1479 aa19.07■□□□□ 0.64
CIITA-213ENST00000618327 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
CIITA-213ENST00000618327 KIF21BO75037 1637 aa19.07■□□□□ 0.64
CIITA-213ENST00000618327 POLA1P09884 1462 aaPredicted RBP19.06■□□□□ 0.64
CIITA-213ENST00000618327 RGL3Q3MIN7 710 aa19.05■□□□□ 0.64
CIITA-213ENST00000618327 ERICH3Q5RHP9 1530 aa19.04■□□□□ 0.64
CIITA-213ENST00000618327 GRIN2BQ13224 1484 aa19.02■□□□□ 0.64
CIITA-213ENST00000618327 CCDC18Q5T9S5 1454 aa19.01■□□□□ 0.63
CIITA-213ENST00000618327 PRXQ9BXM0 1461 aa19■□□□□ 0.63
CIITA-213ENST00000618327 DNMBPQ6XZF7 1577 aa19■□□□□ 0.63
CIITA-213ENST00000618327 GTF3C3Q9Y5Q9 886 aa19■□□□□ 0.63
CIITA-213ENST00000618327 RAB3GAP2Q9H2M9 1393 aa18.99■□□□□ 0.63
CIITA-213ENST00000618327 LAMC3Q9Y6N6 1575 aa18.98■□□□□ 0.63
CIITA-213ENST00000618327 PTPRGP23470 1445 aa18.98■□□□□ 0.63
CIITA-213ENST00000618327 EFCAB2Q5VUJ9 269 aa18.97■□□□□ 0.63
CIITA-213ENST00000618327 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
CIITA-213ENST00000618327 MIER1Q8N108 512 aa18.94■□□□□ 0.62
CIITA-213ENST00000618327 TIMELESSQ9UNS1 1208 aa18.94■□□□□ 0.62
CIITA-213ENST00000618327 ANKRD30AQ9BXX3 1397 aa18.9■□□□□ 0.62
CIITA-213ENST00000618327 ARID4BQ4LE39 1312 aaPredicted RBP18.89■□□□□ 0.61
CIITA-213ENST00000618327 FAM9BQ8IZU0 186 aa18.89■□□□□ 0.61
CIITA-213ENST00000618327 ARAP1Q96P48 1450 aa18.88■□□□□ 0.61
CIITA-213ENST00000618327 CARD11Q9BXL7 1154 aa18.88■□□□□ 0.61
CIITA-213ENST00000618327 HNRNPMP52272 730 aaKnown RBP eCLIP18.88■□□□□ 0.61
CIITA-213ENST00000618327 OSCARQ8IYS5 282 aa18.88■□□□□ 0.61
CIITA-213ENST00000618327 NEFMP07197 916 aa18.87■□□□□ 0.61
CIITA-213ENST00000618327 HNRNPUQ00839 825 aaKnown RBP eCLIP18.87■□□□□ 0.61
CIITA-213ENST00000618327 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
CIITA-213ENST00000618327 PKD2Q13563 968 aa18.86■□□□□ 0.61
CIITA-213ENST00000618327 MPHOSPH9Q99550 1183 aa18.86■□□□□ 0.61
CIITA-213ENST00000618327 KANK1Q14678 1352 aa18.86■□□□□ 0.61
CIITA-213ENST00000618327 RSPH4AQ5TD94 716 aa18.85■□□□□ 0.61
CIITA-213ENST00000618327 TMC1Q8TDI8 760 aa18.85■□□□□ 0.61
CIITA-213ENST00000618327 FOXD1Q16676 465 aa18.84■□□□□ 0.61
CIITA-213ENST00000618327 SENP3Q9H4L4 574 aaPredicted RBP18.84■□□□□ 0.61
CIITA-213ENST00000618327 PPP1R15AO75807 674 aaPredicted RBP18.84■□□□□ 0.61
CIITA-213ENST00000618327 CASKIN1Q8WXD9 1431 aa18.83■□□□□ 0.61
CIITA-213ENST00000618327 MRS2Q9HD23 443 aa18.83■□□□□ 0.6
CIITA-213ENST00000618327 NUP155O75694 1391 aa18.82■□□□□ 0.6
CIITA-213ENST00000618327 DCAF11Q8TEB1 546 aa18.8■□□□□ 0.6
CIITA-213ENST00000618327 LRRC9Q6ZRR7 1453 aa18.79■□□□□ 0.6
CIITA-213ENST00000618327 SNAPC4Q5SXM2 1469 aa18.79■□□□□ 0.6
CIITA-213ENST00000618327 GGT6Q6P531 493 aa18.77■□□□□ 0.6
CIITA-213ENST00000618327 EFCAB5A4FU69 1503 aa18.77■□□□□ 0.59
CIITA-213ENST00000618327 URB2Q14146 1524 aaKnown RBP18.76■□□□□ 0.59
CIITA-213ENST00000618327 SPAG9O60271 1321 aaKnown RBP18.75■□□□□ 0.59
CIITA-213ENST00000618327 TRHP20396 242 aaPredicted RBP18.75■□□□□ 0.59
CIITA-213ENST00000618327 PHLDB1Q86UU1 1377 aa18.75■□□□□ 0.59
CIITA-213ENST00000618327 FYCO1Q9BQS8 1478 aa18.74■□□□□ 0.59
CIITA-213ENST00000618327 CDCA8Q53HL2 280 aa18.73■□□□□ 0.59
CIITA-213ENST00000618327 FGD6Q6ZV73 1430 aa18.73■□□□□ 0.59
CIITA-213ENST00000618327 BIVM-ERCC5R4GMW8 1640 aa18.73■□□□□ 0.59
CIITA-213ENST00000618327 MYOM3Q5VTT5 1437 aa18.73■□□□□ 0.59
CIITA-213ENST00000618327 DHX57Q6P158 1386 aaKnown RBP18.72■□□□□ 0.59
CIITA-213ENST00000618327 CANXP27824 592 aaKnown RBP18.72■□□□□ 0.59
CIITA-213ENST00000618327 PRDM2Q13029 1718 aa18.72■□□□□ 0.59
CIITA-213ENST00000618327 MLECQ14165 292 aa18.71■□□□□ 0.59
CIITA-213ENST00000618327 SALL2Q9Y467 1007 aaPredicted RBP18.71■□□□□ 0.59
CIITA-213ENST00000618327 PRG4Q92954 1404 aaPredicted RBP18.7■□□□□ 0.58
CIITA-213ENST00000618327 KIF3BO15066 747 aa18.7■□□□□ 0.58
CIITA-213ENST00000618327 CYB5RLQ6IPT4 315 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms