RNA–Protein interactions for RNA: ENST00000617020.1

PCDH9-206, Transcript of protocadherin 9, humanhuman

TSL 5

Gene PCDH9, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-206ENST00000617020 HMGXB3Q12766 1538 aa12.89□□□□□ -0.35
PCDH9-206ENST00000617020 LAMC3Q9Y6N6 1575 aa12.88□□□□□ -0.35
PCDH9-206ENST00000617020 LHX8Q68G74 356 aa12.87□□□□□ -0.35
PCDH9-206ENST00000617020 RIMBP3CA6NJZ7 1639 aa12.87□□□□□ -0.35
PCDH9-206ENST00000617020 RIMBP3BA6NNM3 1639 aa12.87□□□□□ -0.35
PCDH9-206ENST00000617020 RIMBP3Q9UFD9 1639 aa12.87□□□□□ -0.35
PCDH9-206ENST00000617020 ATAD2BQ9ULI0 1458 aa12.86□□□□□ -0.35
PCDH9-206ENST00000617020 CD44P16070 742 aaKnown RBP12.8□□□□□ -0.36
PCDH9-206ENST00000617020 FARP1Q9Y4F1 1045 aaPredicted RBP12.8□□□□□ -0.36
PCDH9-206ENST00000617020 WDR62O43379 1518 aa12.77□□□□□ -0.37
PCDH9-206ENST00000617020 POTEIP0CG38 1075 aa12.75□□□□□ -0.37
PCDH9-206ENST00000617020 PDS5BQ9NTI5 1447 aa12.75□□□□□ -0.37
PCDH9-206ENST00000617020 SMARCA4P51532 1647 aa12.74□□□□□ -0.37
PCDH9-206ENST00000617020 MRC2Q9UBG0 1479 aa12.74□□□□□ -0.37
PCDH9-206ENST00000617020 BAZ1BQ9UIG0 1483 aaKnown RBP12.72□□□□□ -0.37
PCDH9-206ENST00000617020 CLCN6P51797 869 aa12.7□□□□□ -0.38
PCDH9-206ENST00000617020 ARHGEF11O15085 1522 aa12.7□□□□□ -0.38
PCDH9-206ENST00000617020 CSRNP3Q8WYN3 585 aa12.63□□□□□ -0.39
PCDH9-206ENST00000617020 ZNF579Q8NAF0 562 aaKnown RBP12.62□□□□□ -0.39
PCDH9-206ENST00000617020 PEG3Q9GZU2 1588 aa12.6□□□□□ -0.39
PCDH9-206ENST00000617020 CREBZFQ9NS37 354 aa12.59□□□□□ -0.39
PCDH9-206ENST00000617020 DCBLD2Q96PD2 775 aa12.57□□□□□ -0.4
PCDH9-206ENST00000617020 ZRANB1Q9UGI0 708 aa12.56□□□□□ -0.4
PCDH9-206ENST00000617020 STAG3Q9UJ98 1225 aa12.54□□□□□ -0.4
PCDH9-206ENST00000617020 CADPSQ9ULU8 1353 aa12.54□□□□□ -0.4
PCDH9-206ENST00000617020 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
PCDH9-206ENST00000617020 CYB5RLQ6IPT4 315 aa12.53□□□□□ -0.4
PCDH9-206ENST00000617020 ARAP1Q96P48 1450 aa12.53□□□□□ -0.4
PCDH9-206ENST00000617020 GALR2O43603 387 aaPredicted RBP12.47□□□□□ -0.41
PCDH9-206ENST00000617020 CHD1O14646 1710 aa12.45□□□□□ -0.42
PCDH9-206ENST00000617020 FANCD2Q9BXW9 1451 aa12.45□□□□□ -0.42
PCDH9-206ENST00000617020 ILDR1Q86SU0 546 aaPredicted RBP12.44□□□□□ -0.42
PCDH9-206ENST00000617020 SPDYE4A6NLX3 237 aa12.43□□□□□ -0.42
PCDH9-206ENST00000617020 URB2Q14146 1524 aaKnown RBP12.42□□□□□ -0.42
PCDH9-206ENST00000617020 ZNF608Q9ULD9 1512 aaPredicted RBP12.38□□□□□ -0.43
PCDH9-206ENST00000617020 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
PCDH9-206ENST00000617020 PHF12Q96QT6 1004 aa12.38□□□□□ -0.43
PCDH9-206ENST00000617020 MROH2BQ7Z745 1585 aa12.38□□□□□ -0.43
PCDH9-206ENST00000617020 EIF4G3O43432 1585 aaKnown RBP12.35□□□□□ -0.43
PCDH9-206ENST00000617020 MNX1P50219 401 aaPredicted RBP12.34□□□□□ -0.43
PCDH9-206ENST00000617020 OTUD5Q96G74 571 aa12.34□□□□□ -0.43
PCDH9-206ENST00000617020 RSF1Q96T23 1441 aaPredicted RBP12.34□□□□□ -0.43
PCDH9-206ENST00000617020 POTEB2H3BUK9 544 aa12.32□□□□□ -0.44
PCDH9-206ENST00000617020 NPM1P06748 294 aaKnown RBP eCLIP12.31□□□□□ -0.44
PCDH9-206ENST00000617020 IFT140Q96RY7 1462 aa12.29□□□□□ -0.44
PCDH9-206ENST00000617020 PRDM2Q13029 1718 aa12.29□□□□□ -0.44
PCDH9-206ENST00000617020 PLSCR2Q9NRY7 297 aa12.29□□□□□ -0.44
PCDH9-206ENST00000617020 CFTRP13569 1480 aa12.27□□□□□ -0.45
PCDH9-206ENST00000617020 PELP1Q8IZL8 1130 aaKnown RBP12.26□□□□□ -0.45
PCDH9-206ENST00000617020 EHMT2Q96KQ7 1210 aa12.26□□□□□ -0.45
PCDH9-206ENST00000617020 WIZO95785 1651 aa12.26□□□□□ -0.45
PCDH9-206ENST00000617020 MS4A3Q96HJ5 214 aa12.21□□□□□ -0.45
PCDH9-206ENST00000617020 CLASP1Q7Z460 1538 aa12.21□□□□□ -0.46
PCDH9-206ENST00000617020 ASTLQ6HA08 431 aaPredicted RBP12.2□□□□□ -0.46
PCDH9-206ENST00000617020 METRNQ9UJH8 293 aa12.16□□□□□ -0.46
PCDH9-206ENST00000617020 KIF13AQ9H1H9 1805 aa12.16□□□□□ -0.46
PCDH9-206ENST00000617020 ATMINO43313 823 aaPredicted RBP12.15□□□□□ -0.46
PCDH9-206ENST00000617020 TOPBP1Q92547 1522 aa12.15□□□□□ -0.46
PCDH9-206ENST00000617020 TARBP1Q13395 1621 aaKnown RBP12.15□□□□□ -0.47
PCDH9-206ENST00000617020 PROM2Q8N271 834 aa12.14□□□□□ -0.47
PCDH9-206ENST00000617020 AQRO60306 1485 aaKnown RBP eCLIP12.14□□□□□ -0.47
PCDH9-206ENST00000617020 POTEMA6NI47 508 aa12.13□□□□□ -0.47
PCDH9-206ENST00000617020 SLC39A7Q92504 469 aa12.13□□□□□ -0.47
PCDH9-206ENST00000617020 C7P10643 843 aa12.12□□□□□ -0.47
PCDH9-206ENST00000617020 SYNJ1O43426 1573 aa12.1□□□□□ -0.47
PCDH9-206ENST00000617020 POTEJP0CG39 1038 aa12.1□□□□□ -0.47
PCDH9-206ENST00000617020 POTEGQ6S5H5 508 aa12.09□□□□□ -0.47
PCDH9-206ENST00000617020 TSPYL2Q9H2G4 693 aaPredicted RBP12.08□□□□□ -0.48
PCDH9-206ENST00000617020 CCDC61Q9Y6R9 512 aa12.08□□□□□ -0.48
PCDH9-206ENST00000617020 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
PCDH9-206ENST00000617020 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
PCDH9-206ENST00000617020 KDM4FA0A1W2PPD8 638 aa12.04□□□□□ -0.48
PCDH9-206ENST00000617020 SNAPC4Q5SXM2 1469 aa12.03□□□□□ -0.48
PCDH9-206ENST00000617020 ATN1P54259 1190 aaPredicted RBP12.03□□□□□ -0.48
PCDH9-206ENST00000617020 MAMSTRQ6ZN01 415 aa12.03□□□□□ -0.48
PCDH9-206ENST00000617020 KIF12Q96FN5 646 aa12.02□□□□□ -0.49
PCDH9-206ENST00000617020 ABCC8Q09428 1581 aa12.01□□□□□ -0.49
PCDH9-206ENST00000617020 TOP2AP11388 1531 aaKnown RBP12.01□□□□□ -0.49
PCDH9-206ENST00000617020 ERCC6L2Q5T890 1561 aa12□□□□□ -0.49
PCDH9-206ENST00000617020 POLA1P09884 1462 aaPredicted RBP11.97□□□□□ -0.49
PCDH9-206ENST00000617020 BMP2KQ9NSY1 1161 aaPredicted RBP11.97□□□□□ -0.49
PCDH9-206ENST00000617020 HECW2Q9P2P5 1572 aa11.96□□□□□ -0.49
PCDH9-206ENST00000617020 LCE2DQ5TA82 110 aaPredicted RBP11.96□□□□□ -0.49
PCDH9-206ENST00000617020 PCDH10Q9P2E7 1040 aa11.96□□□□□ -0.49
PCDH9-206ENST00000617020 SCUBE2Q9NQ36 999 aa11.95□□□□□ -0.5
PCDH9-206ENST00000617020 TRPC6Q9Y210 931 aa11.95□□□□□ -0.5
PCDH9-206ENST00000617020 WDR97A6NE52 1622 aa11.95□□□□□ -0.5
PCDH9-206ENST00000617020 MAGI1Q96QZ7 1491 aaPredicted RBP11.95□□□□□ -0.5
PCDH9-206ENST00000617020 KDM6BO15054 1643 aa11.94□□□□□ -0.5
PCDH9-206ENST00000617020 POTEFA5A3E0 1075 aa11.94□□□□□ -0.5
PCDH9-206ENST00000617020 RAD54L2Q9Y4B4 1467 aa11.94□□□□□ -0.5
PCDH9-206ENST00000617020 TDRD9Q8NDG6 1382 aaKnown RBP11.92□□□□□ -0.5
PCDH9-206ENST00000617020 SYNJ2O15056 1496 aa11.92□□□□□ -0.5
PCDH9-206ENST00000617020 MAP3K13O43283 966 aa11.92□□□□□ -0.5
PCDH9-206ENST00000617020 TIE1P35590 1138 aa11.92□□□□□ -0.5
PCDH9-206ENST00000617020 CHMP7Q8WUX9 453 aaPredicted RBP11.92□□□□□ -0.5
PCDH9-206ENST00000617020 PBRM1Q86U86 1689 aa11.91□□□□□ -0.5
PCDH9-206ENST00000617020 RASEFQ8IZ41 740 aa11.91□□□□□ -0.5
PCDH9-206ENST00000617020 PLEKHG5O94827 1062 aa11.89□□□□□ -0.51
PCDH9-206ENST00000617020 TSPOAP1O95153 1857 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms