RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.49■□□□□ 0.55
MSH6-214ENST00000616033 SYNJ1O43426 1573 aa18.47■□□□□ 0.55
MSH6-214ENST00000616033 RAB3GAP2Q9H2M9 1393 aa18.46■□□□□ 0.55
MSH6-214ENST00000616033 CDK11AQ9UQ88 783 aaPredicted RBP18.46■□□□□ 0.55
MSH6-214ENST00000616033 PEG3Q9GZU2 1588 aa18.46■□□□□ 0.54
MSH6-214ENST00000616033 SENP3-EIF4A1A0A087X0R7 540 aa18.45■□□□□ 0.54
MSH6-214ENST00000616033 CCNB3Q8WWL7 1395 aa18.44■□□□□ 0.54
MSH6-214ENST00000616033 NBR1Q14596 966 aa18.43■□□□□ 0.54
MSH6-214ENST00000616033 SALL2Q9Y467 1007 aaPredicted RBP18.43■□□□□ 0.54
MSH6-214ENST00000616033 NCAPD3P42695 1498 aa18.41■□□□□ 0.54
MSH6-214ENST00000616033 DEKP35659 375 aaKnown RBP18.36■□□□□ 0.53
MSH6-214ENST00000616033 PPP1R15AO75807 674 aaPredicted RBP18.34■□□□□ 0.53
MSH6-214ENST00000616033 B4GALNT3Q6L9W6 998 aa18.33■□□□□ 0.52
MSH6-214ENST00000616033 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
MSH6-214ENST00000616033 ARAP1Q96P48 1450 aa18.32■□□□□ 0.52
MSH6-214ENST00000616033 FAM9BQ8IZU0 186 aa18.31■□□□□ 0.52
MSH6-214ENST00000616033 EIF5BO60841 1220 aaKnown RBP18.26■□□□□ 0.51
MSH6-214ENST00000616033 CC2D2AQ9P2K1 1620 aa18.25■□□□□ 0.51
MSH6-214ENST00000616033 POLR3GLQ9BT43 218 aa18.24■□□□□ 0.51
MSH6-214ENST00000616033 CADPSQ9ULU8 1353 aa18.24■□□□□ 0.51
MSH6-214ENST00000616033 TONSLQ96HA7 1378 aa18.23■□□□□ 0.51
MSH6-214ENST00000616033 SETD5Q9C0A6 1442 aa18.23■□□□□ 0.51
MSH6-214ENST00000616033 RRBP1Q9P2E9 1410 aaKnown RBP18.22■□□□□ 0.51
MSH6-214ENST00000616033 NESP48681 1621 aa18.22■□□□□ 0.51
MSH6-214ENST00000616033 CCER2I3L3R5 266 aa18.21■□□□□ 0.51
MSH6-214ENST00000616033 CUX1P39880 1505 aa18.2■□□□□ 0.5
MSH6-214ENST00000616033 HMGXB3Q12766 1538 aa18.2■□□□□ 0.5
MSH6-214ENST00000616033 CFTRP13569 1480 aa18.19■□□□□ 0.5
MSH6-214ENST00000616033 MAPKBP1O60336 1514 aa18.19■□□□□ 0.5
MSH6-214ENST00000616033 CCDC184Q52MB2 194 aa18.18■□□□□ 0.5
MSH6-214ENST00000616033 CUX2O14529 1486 aa18.16■□□□□ 0.5
MSH6-214ENST00000616033 KIF27Q86VH2 1401 aa18.14■□□□□ 0.49
MSH6-214ENST00000616033 PHLDB1Q86UU1 1377 aa18.14■□□□□ 0.49
MSH6-214ENST00000616033 FANCIQ9NVI1 1328 aa18.13■□□□□ 0.49
MSH6-214ENST00000616033 PAK3O75914 559 aaPredicted RBP18.12■□□□□ 0.49
MSH6-214ENST00000616033 CHIC2Q9UKJ5 165 aa18.12■□□□□ 0.49
MSH6-214ENST00000616033 TOP2BQ02880 1626 aa18.12■□□□□ 0.49
MSH6-214ENST00000616033 IL27Q8NEV9 243 aa18.11■□□□□ 0.49
MSH6-214ENST00000616033 NPM2Q86SE8 214 aaKnown RBP18.11■□□□□ 0.49
MSH6-214ENST00000616033 MRS2Q9HD23 443 aa18.1■□□□□ 0.49
MSH6-214ENST00000616033 PPP4R2Q9NY27 417 aa18.1■□□□□ 0.49
MSH6-214ENST00000616033 ARHGAP35Q9NRY4 1499 aa18.09■□□□□ 0.49
MSH6-214ENST00000616033 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
MSH6-214ENST00000616033 FANCD2Q9BXW9 1451 aa18.06■□□□□ 0.48
MSH6-214ENST00000616033 PRXQ9BXM0 1461 aa18.06■□□□□ 0.48
MSH6-214ENST00000616033 NOP58Q9Y2X3 529 aaKnown RBP18.05■□□□□ 0.48
MSH6-214ENST00000616033 ARID3CA6NKF2 412 aa18.05■□□□□ 0.48
MSH6-214ENST00000616033 RRP7BPQ9NSQ0 103 aa18.05■□□□□ 0.48
MSH6-214ENST00000616033 HSPA5P11021 654 aaKnown RBP18.04■□□□□ 0.48
MSH6-214ENST00000616033 RTL5Q5HYW3 569 aaPredicted RBP18.04■□□□□ 0.48
MSH6-214ENST00000616033 FGD5Q6ZNL6 1462 aa18.03■□□□□ 0.48
MSH6-214ENST00000616033 FOXD1Q16676 465 aa18.03■□□□□ 0.48
MSH6-214ENST00000616033 IGF1RP08069 1367 aa18.02■□□□□ 0.48
MSH6-214ENST00000616033 TDRD9Q8NDG6 1382 aaKnown RBP18.02■□□□□ 0.47
MSH6-214ENST00000616033 CARMIL1Q5VZK9 1371 aa18.01■□□□□ 0.47
MSH6-214ENST00000616033 WASHC2AQ641Q2 1341 aa17.98■□□□□ 0.47
MSH6-214ENST00000616033 ZNF326Q5BKZ1 582 aaKnown RBP17.98■□□□□ 0.47
MSH6-214ENST00000616033 ANP32AP39687 249 aaKnown RBP17.95■□□□□ 0.46
MSH6-214ENST00000616033 LAS1LQ9Y4W2 734 aaKnown RBP17.95■□□□□ 0.46
MSH6-214ENST00000616033 ZBTB47Q9UFB7 747 aaPredicted RBP17.94■□□□□ 0.46
MSH6-214ENST00000616033 EIF4G2P78344 907 aaKnown RBP eCLIP17.93■□□□□ 0.46
MSH6-214ENST00000616033 TIMELESSQ9UNS1 1208 aa17.92■□□□□ 0.46
MSH6-214ENST00000616033 BIVM-ERCC5R4GMW8 1640 aa17.92■□□□□ 0.46
MSH6-214ENST00000616033 LRRC9Q6ZRR7 1453 aa17.92■□□□□ 0.46
MSH6-214ENST00000616033 ERICH3Q5RHP9 1530 aa17.91■□□□□ 0.46
MSH6-214ENST00000616033 C11orf95C9JLR9 678 aaPredicted RBP17.91■□□□□ 0.46
MSH6-214ENST00000616033 FHOD3Q2V2M9 1422 aa17.9■□□□□ 0.46
MSH6-214ENST00000616033 PRKRIP1Q9H875 184 aaPredicted RBP17.86■□□□□ 0.45
MSH6-214ENST00000616033 TIAM1Q13009 1591 aa17.86■□□□□ 0.45
MSH6-214ENST00000616033 MTUS2Q5JR59 1369 aa17.85■□□□□ 0.45
MSH6-214ENST00000616033 AKNAQ7Z591 1439 aa17.85■□□□□ 0.45
MSH6-214ENST00000616033 FBLN2P98095 1184 aa17.84■□□□□ 0.45
MSH6-214ENST00000616033 MYT1LQ9UL68 1186 aa17.84■□□□□ 0.45
MSH6-214ENST00000616033 POLA1P09884 1462 aaPredicted RBP17.83■□□□□ 0.44
MSH6-214ENST00000616033 L3MBTL2Q969R5 705 aa17.82■□□□□ 0.44
MSH6-214ENST00000616033 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
MSH6-214ENST00000616033 CCDC18Q5T9S5 1454 aa17.82■□□□□ 0.44
MSH6-214ENST00000616033 IPO9Q96P70 1041 aaKnown RBP17.8■□□□□ 0.44
MSH6-214ENST00000616033 NEFMP07197 916 aa17.78■□□□□ 0.44
MSH6-214ENST00000616033 PDS5BQ9NTI5 1447 aa17.77■□□□□ 0.44
MSH6-214ENST00000616033 URB2Q14146 1524 aaKnown RBP17.76■□□□□ 0.43
MSH6-214ENST00000616033 AQRO60306 1485 aaKnown RBP eCLIP17.76■□□□□ 0.438e-7■■■■■ 33.8
MSH6-214ENST00000616033 ZBED9Q6R2W3 1325 aa17.75■□□□□ 0.43
MSH6-214ENST00000616033 SKAP1Q86WV1 359 aa17.75■□□□□ 0.43
MSH6-214ENST00000616033 PTPRKQ15262 1439 aa17.74■□□□□ 0.43
MSH6-214ENST00000616033 ERICH6BQ5W0A0 696 aa17.74■□□□□ 0.43
MSH6-214ENST00000616033 FHAD1B1AJZ9 1412 aa17.74■□□□□ 0.43
MSH6-214ENST00000616033 UBE2Q2Q8WVN8 375 aa17.73■□□□□ 0.43
MSH6-214ENST00000616033 TMC1Q8TDI8 760 aa17.7■□□□□ 0.42
MSH6-214ENST00000616033 NBPF8Q3BBV2 869 aa17.7■□□□□ 0.42
MSH6-214ENST00000616033 PLEKHG5O94827 1062 aa17.69■□□□□ 0.42
MSH6-214ENST00000616033 FGD6Q6ZV73 1430 aa17.69■□□□□ 0.42
MSH6-214ENST00000616033 PCF11O94913 1555 aaKnown RBP17.69■□□□□ 0.42
MSH6-214ENST00000616033 MPHOSPH9Q99550 1183 aa17.69■□□□□ 0.42
MSH6-214ENST00000616033 UACAQ9BZF9 1416 aa17.68■□□□□ 0.42
MSH6-214ENST00000616033 CNTLNQ9NXG0 1405 aa17.68■□□□□ 0.42
MSH6-214ENST00000616033 SLC4A3P48751 1232 aa17.68■□□□□ 0.42
MSH6-214ENST00000616033 DNMBPQ6XZF7 1577 aa17.68■□□□□ 0.42
MSH6-214ENST00000616033 KIF7Q2M1P5 1343 aa17.67■□□□□ 0.42
MSH6-214ENST00000616033 CCDC7Q96M83 1385 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms