RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RIMBP3Q9UFD9 1639 aa27.6■■■□□ 2.01
CCDC28A-202ENST00000611852 FAM9AQ8IZU1 332 aaPredicted RBP27.59■■■□□ 2.01
CCDC28A-202ENST00000611852 KIAA0586Q9BVV6 1533 aa27.55■■■□□ 2
CCDC28A-202ENST00000611852 SHROOM2Q13796 1616 aa27.53■■■□□ 2
CCDC28A-202ENST00000611852 JPH4Q96JJ6 628 aa27.48■■□□□ 1.99
CCDC28A-202ENST00000611852 ERCC6L2Q5T890 1561 aa27.42■■□□□ 1.98
CCDC28A-202ENST00000611852 ARAP1Q96P48 1450 aa27.42■■□□□ 1.98
CCDC28A-202ENST00000611852 IQGAP2Q13576 1575 aa27.42■■□□□ 1.98
CCDC28A-202ENST00000611852 PRG4Q92954 1404 aaPredicted RBP27.42■■□□□ 1.98
CCDC28A-202ENST00000611852 KIF21BO75037 1637 aa27.39■■□□□ 1.97
CCDC28A-202ENST00000611852 CTTNBP2Q8WZ74 1663 aa27.37■■□□□ 1.97
CCDC28A-202ENST00000611852 CYB5RLQ6IPT4 315 aa27.36■■□□□ 1.97
CCDC28A-202ENST00000611852 UGGT2Q9NYU1 1516 aa27.28■■□□□ 1.96
CCDC28A-202ENST00000611852 CARMIL2Q6F5E8 1435 aa27.24■■□□□ 1.95
CCDC28A-202ENST00000611852 GOLGA3Q08378 1498 aa27.23■■□□□ 1.95
CCDC28A-202ENST00000611852 DISP1Q96F81 1524 aa27.23■■□□□ 1.95
CCDC28A-202ENST00000611852 EHMT2Q96KQ7 1210 aa27.21■■□□□ 1.95
CCDC28A-202ENST00000611852 KIAA0556O60303 1618 aa27.16■■□□□ 1.94
CCDC28A-202ENST00000611852 UBTFP17480 764 aaKnown RBP27.15■■□□□ 1.94
CCDC28A-202ENST00000611852 TNIKQ9UKE5 1360 aa27.14■■□□□ 1.94
CCDC28A-202ENST00000611852 PTPRGP23470 1445 aa27.11■■□□□ 1.93
CCDC28A-202ENST00000611852 TTBK1Q5TCY1 1321 aaPredicted RBP27.06■■□□□ 1.92
CCDC28A-202ENST00000611852 SAMD9Q5K651 1589 aa27.05■■□□□ 1.92
CCDC28A-202ENST00000611852 RANGAP1P46060 587 aaPredicted RBP27.03■■□□□ 1.92
CCDC28A-202ENST00000611852 P3H3Q8IVL6 736 aa26.99■■□□□ 1.91
CCDC28A-202ENST00000611852 ADCY10Q96PN6 1610 aa26.97■■□□□ 1.91
CCDC28A-202ENST00000611852 EFCAB5A4FU69 1503 aa26.95■■□□□ 1.91
CCDC28A-202ENST00000611852 UACAQ9BZF9 1416 aa26.94■■□□□ 1.9
CCDC28A-202ENST00000611852 UHRF1BP1LA0JNW5 1464 aa26.91■■□□□ 1.9
CCDC28A-202ENST00000611852 FHOD3Q2V2M9 1422 aa26.89■■□□□ 1.9
CCDC28A-202ENST00000611852 PLB1Q6P1J6 1458 aa26.88■■□□□ 1.89
CCDC28A-202ENST00000611852 ABCC2Q92887 1545 aa26.88■■□□□ 1.89
CCDC28A-202ENST00000611852 ARHGAP35Q9NRY4 1499 aa26.87■■□□□ 1.89
CCDC28A-202ENST00000611852 NPM1P06748 294 aaKnown RBP eCLIP26.85■■□□□ 1.89
CCDC28A-202ENST00000611852 ABCA8O94911 1581 aa26.85■■□□□ 1.89
CCDC28A-202ENST00000611852 LOC105371045A0A1W2PR82 267 aa26.84■■□□□ 1.89
CCDC28A-202ENST00000611852 KDM5BQ9UGL1 1544 aa26.78■■□□□ 1.88
CCDC28A-202ENST00000611852 MAPKBP1O60336 1514 aa26.76■■□□□ 1.88
CCDC28A-202ENST00000611852 CLIP1P30622 1438 aa26.76■■□□□ 1.87
CCDC28A-202ENST00000611852 RAPGEF6Q8TEU7 1601 aa26.74■■□□□ 1.87
CCDC28A-202ENST00000611852 TRHP20396 242 aaPredicted RBP26.72■■□□□ 1.87
CCDC28A-202ENST00000611852 ZCCHC11Q5TAX3 1644 aaKnown RBP26.72■■□□□ 1.87
CCDC28A-202ENST00000611852 FMN1Q68DA7 1419 aa26.71■■□□□ 1.87
CCDC28A-202ENST00000611852 CEP162Q5TB80 1403 aa26.68■■□□□ 1.86
CCDC28A-202ENST00000611852 ASXL2Q76L83 1435 aa26.66■■□□□ 1.86
CCDC28A-202ENST00000611852 NUP153P49790 1475 aaKnown RBP26.66■■□□□ 1.86
CCDC28A-202ENST00000611852 ATP10BO94823 1461 aa26.64■■□□□ 1.85
CCDC28A-202ENST00000611852 ARID3CA6NKF2 412 aa26.63■■□□□ 1.85
CCDC28A-202ENST00000611852 ABCC10Q5T3U5 1492 aa26.62■■□□□ 1.85
CCDC28A-202ENST00000611852 KIF13AQ9H1H9 1805 aa26.58■■□□□ 1.85
CCDC28A-202ENST00000611852 DIP2BQ9P265 1576 aa26.58■■□□□ 1.85
CCDC28A-202ENST00000611852 FAM69CQ0P6D2 419 aa26.55■■□□□ 1.84
CCDC28A-202ENST00000611852 WDR7Q9Y4E6 1490 aa26.55■■□□□ 1.84
CCDC28A-202ENST00000611852 HECW1Q76N89 1606 aa26.55■■□□□ 1.84
CCDC28A-202ENST00000611852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.52■■□□□ 1.84
CCDC28A-202ENST00000611852 HNRNPUL2Q1KMD3 747 aaKnown RBP26.52■■□□□ 1.84
CCDC28A-202ENST00000611852 ATP1B4Q9UN42 357 aaPredicted RBP26.52■■□□□ 1.84
CCDC28A-202ENST00000611852 CASKIN1Q8WXD9 1431 aa26.52■■□□□ 1.84
CCDC28A-202ENST00000611852 PCF11O94913 1555 aaKnown RBP26.52■■□□□ 1.84
CCDC28A-202ENST00000611852 EPRSP07814 1512 aaKnown RBP26.5■■□□□ 1.83
CCDC28A-202ENST00000611852 CDK13Q14004 1512 aaKnown RBP26.49■■□□□ 1.83
CCDC28A-202ENST00000611852 GLI2P10070 1586 aa26.47■■□□□ 1.83
CCDC28A-202ENST00000611852 FYCO1Q9BQS8 1478 aa26.47■■□□□ 1.83
CCDC28A-202ENST00000611852 LRRIQ1Q96JM4 1722 aa26.44■■□□□ 1.82
CCDC28A-202ENST00000611852 KCNH8Q96L42 1107 aa26.44■■□□□ 1.82
CCDC28A-202ENST00000611852 PLEKHD1A6NEE1 506 aa26.41■■□□□ 1.82
CCDC28A-202ENST00000611852 CCDC18Q5T9S5 1454 aa26.39■■□□□ 1.81
CCDC28A-202ENST00000611852 MAP3K4Q9Y6R4 1608 aa26.36■■□□□ 1.81
CCDC28A-202ENST00000611852 VPS8Q8N3P4 1428 aa26.35■■□□□ 1.81
CCDC28A-202ENST00000611852 CDK11AQ9UQ88 783 aaPredicted RBP26.34■■□□□ 1.81
CCDC28A-202ENST00000611852 TSPOAP1O95153 1857 aa26.34■■□□□ 1.81
CCDC28A-202ENST00000611852 CFAP43Q8NDM7 1665 aa26.31■■□□□ 1.8
CCDC28A-202ENST00000611852 ABCA9Q8IUA7 1624 aa26.3■■□□□ 1.8
CCDC28A-202ENST00000611852 PPRC1Q5VV67 1664 aaKnown RBP26.29■■□□□ 1.8
CCDC28A-202ENST00000611852 CD109Q6YHK3 1445 aa26.28■■□□□ 1.8
CCDC28A-202ENST00000611852 TROQ12816 1431 aaPredicted RBP26.27■■□□□ 1.8
CCDC28A-202ENST00000611852 MAGI3Q5TCQ9 1506 aa26.25■■□□□ 1.79
CCDC28A-202ENST00000611852 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.23■■□□□ 1.79
CCDC28A-202ENST00000611852 TEX14Q8IWB6 1497 aa26.21■■□□□ 1.79
CCDC28A-202ENST00000611852 KIF14Q15058 1648 aa26.2■■□□□ 1.78
CCDC28A-202ENST00000611852 TTC37Q6PGP7 1564 aa26.2■■□□□ 1.78
CCDC28A-202ENST00000611852 TIAM1Q13009 1591 aa26.15■■□□□ 1.78
CCDC28A-202ENST00000611852 MTUS2Q5JR59 1369 aa26.13■■□□□ 1.77
CCDC28A-202ENST00000611852 MAP3K1Q13233 1512 aa26.1■■□□□ 1.77
CCDC28A-202ENST00000611852 KDM6BO15054 1643 aa26.1■■□□□ 1.77
CCDC28A-202ENST00000611852 EHBP1L1Q8N3D4 1523 aa26.09■■□□□ 1.77
CCDC28A-202ENST00000611852 PLCH2O75038 1416 aa26.08■■□□□ 1.77
CCDC28A-202ENST00000611852 MYO5CQ9NQX4 1742 aa26.07■■□□□ 1.76
CCDC28A-202ENST00000611852 NEO1Q92859 1461 aa26.06■■□□□ 1.76
CCDC28A-202ENST00000611852 COL17A1Q9UMD9 1497 aaPredicted RBP26.05■■□□□ 1.76
CCDC28A-202ENST00000611852 FANCAO15360 1455 aa26.04■■□□□ 1.76
CCDC28A-202ENST00000611852 PHLDB1Q86UU1 1377 aa26.03■■□□□ 1.76
CCDC28A-202ENST00000611852 LRRC9Q6ZRR7 1453 aa26.03■■□□□ 1.76
CCDC28A-202ENST00000611852 ARAP3Q8WWN8 1544 aa26.03■■□□□ 1.76
CCDC28A-202ENST00000611852 APLP2Q06481 763 aa26.02■■□□□ 1.76
CCDC28A-202ENST00000611852 KANK4Q5T7N3 995 aaPredicted RBP26.01■■□□□ 1.75
CCDC28A-202ENST00000611852 CFAP74Q9C0B2 1584 aa26■■□□□ 1.75
CCDC28A-202ENST00000611852 PREX2Q70Z35 1606 aa25.98■■□□□ 1.75
CCDC28A-202ENST00000611852 AKNAQ7Z591 1439 aa25.98■■□□□ 1.75
CCDC28A-202ENST00000611852 CDC42BPAQ5VT25 1732 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms