RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 RIMBP3CA6NJZ7 1639 aa14.63□□□□□ -0.07
SMAD4-217ENST00000611848 RIMBP3BA6NNM3 1639 aa14.63□□□□□ -0.07
SMAD4-217ENST00000611848 RIMBP3Q9UFD9 1639 aa14.63□□□□□ -0.07
SMAD4-217ENST00000611848 PRXQ9BXM0 1461 aa14.62□□□□□ -0.07
SMAD4-217ENST00000611848 KIAA0586Q9BVV6 1533 aa14.6□□□□□ -0.07
SMAD4-217ENST00000611848 SHROOM2Q13796 1616 aa14.58□□□□□ -0.07
SMAD4-217ENST00000611848 JPH4Q96JJ6 628 aa14.58□□□□□ -0.08
SMAD4-217ENST00000611848 FAM9AQ8IZU1 332 aaPredicted RBP14.57□□□□□ -0.08
SMAD4-217ENST00000611848 PRG4Q92954 1404 aaPredicted RBP14.52□□□□□ -0.08
SMAD4-217ENST00000611848 ARAP1Q96P48 1450 aa14.52□□□□□ -0.08
SMAD4-217ENST00000611848 IQGAP2Q13576 1575 aa14.52□□□□□ -0.09
SMAD4-217ENST00000611848 CYB5RLQ6IPT4 315 aa14.52□□□□□ -0.09
SMAD4-217ENST00000611848 CTTNBP2Q8WZ74 1663 aa14.5□□□□□ -0.09
SMAD4-217ENST00000611848 ERCC6L2Q5T890 1561 aa14.49□□□□□ -0.09
SMAD4-217ENST00000611848 KIF21BO75037 1637 aa14.49□□□□□ -0.09
SMAD4-217ENST00000611848 UGGT2Q9NYU1 1516 aa14.45□□□□□ -0.1
SMAD4-217ENST00000611848 CARMIL2Q6F5E8 1435 aa14.45□□□□□ -0.1
SMAD4-217ENST00000611848 GOLGA3Q08378 1498 aa14.41□□□□□ -0.1
SMAD4-217ENST00000611848 DISP1Q96F81 1524 aa14.41□□□□□ -0.1
SMAD4-217ENST00000611848 TNIKQ9UKE5 1360 aa14.39□□□□□ -0.11
SMAD4-217ENST00000611848 UBTFP17480 764 aaKnown RBP14.38□□□□□ -0.11
SMAD4-217ENST00000611848 KIAA0556O60303 1618 aa14.37□□□□□ -0.11
SMAD4-217ENST00000611848 PLPPR3Q6T4P5 718 aa14.37□□□□□ -0.11
SMAD4-217ENST00000611848 PTPRGP23470 1445 aa14.37□□□□□ -0.11
SMAD4-217ENST00000611848 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
SMAD4-217ENST00000611848 FOXD1Q16676 465 aa14.33□□□□□ -0.12
SMAD4-217ENST00000611848 TTBK1Q5TCY1 1321 aaPredicted RBP14.31□□□□□ -0.12
SMAD4-217ENST00000611848 SAMD9Q5K651 1589 aa14.31□□□□□ -0.12
SMAD4-217ENST00000611848 EFCAB5A4FU69 1503 aa14.28□□□□□ -0.12
SMAD4-217ENST00000611848 RANGAP1P46060 587 aaPredicted RBP14.28□□□□□ -0.12
SMAD4-217ENST00000611848 UACAQ9BZF9 1416 aa14.28□□□□□ -0.12
SMAD4-217ENST00000611848 ADCY10Q96PN6 1610 aa14.28□□□□□ -0.12
SMAD4-217ENST00000611848 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.12
SMAD4-217ENST00000611848 P3H3Q8IVL6 736 aa14.27□□□□□ -0.12
SMAD4-217ENST00000611848 UHRF1BP1LA0JNW5 1464 aa14.26□□□□□ -0.13
SMAD4-217ENST00000611848 ABCC2Q92887 1545 aa14.25□□□□□ -0.13
SMAD4-217ENST00000611848 FHOD3Q2V2M9 1422 aa14.22□□□□□ -0.13
SMAD4-217ENST00000611848 PLB1Q6P1J6 1458 aa14.22□□□□□ -0.13
SMAD4-217ENST00000611848 ABCA8O94911 1581 aa14.22□□□□□ -0.13
SMAD4-217ENST00000611848 ARHGAP35Q9NRY4 1499 aa14.2□□□□□ -0.14
SMAD4-217ENST00000611848 KDM5BQ9UGL1 1544 aa14.2□□□□□ -0.14
SMAD4-217ENST00000611848 TRHP20396 242 aaPredicted RBP14.19□□□□□ -0.14
SMAD4-217ENST00000611848 MAPKBP1O60336 1514 aa14.19□□□□□ -0.14
SMAD4-217ENST00000611848 LOC105371045A0A1W2PR82 267 aa14.16□□□□□ -0.14
SMAD4-217ENST00000611848 CLIP1P30622 1438 aa14.16□□□□□ -0.14
SMAD4-217ENST00000611848 FMN1Q68DA7 1419 aa14.16□□□□□ -0.14
SMAD4-217ENST00000611848 RAPGEF6Q8TEU7 1601 aa14.16□□□□□ -0.14
SMAD4-217ENST00000611848 ZCCHC11Q5TAX3 1644 aaKnown RBP14.15□□□□□ -0.14
SMAD4-217ENST00000611848 ASXL2Q76L83 1435 aa14.12□□□□□ -0.15
SMAD4-217ENST00000611848 ABCC10Q5T3U5 1492 aa14.11□□□□□ -0.15
SMAD4-217ENST00000611848 ATP10BO94823 1461 aa14.11□□□□□ -0.15
SMAD4-217ENST00000611848 CEP162Q5TB80 1403 aa14.1□□□□□ -0.15
SMAD4-217ENST00000611848 NUP153P49790 1475 aaKnown RBP14.1□□□□□ -0.15
SMAD4-217ENST00000611848 KIF13AQ9H1H9 1805 aa14.1□□□□□ -0.15
SMAD4-217ENST00000611848 FAM69CQ0P6D2 419 aa14.08□□□□□ -0.15
SMAD4-217ENST00000611848 DIP2BQ9P265 1576 aa14.08□□□□□ -0.16
SMAD4-217ENST00000611848 ARID3CA6NKF2 412 aa14.07□□□□□ -0.16
SMAD4-217ENST00000611848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.07□□□□□ -0.16
SMAD4-217ENST00000611848 HNRNPUL2Q1KMD3 747 aaKnown RBP14.07□□□□□ -0.16
SMAD4-217ENST00000611848 WDR7Q9Y4E6 1490 aa14.07□□□□□ -0.16
SMAD4-217ENST00000611848 HECW1Q76N89 1606 aa14.06□□□□□ -0.16
SMAD4-217ENST00000611848 CASKIN1Q8WXD9 1431 aa14.05□□□□□ -0.16
SMAD4-217ENST00000611848 EPRSP07814 1512 aaKnown RBP14.04□□□□□ -0.16
SMAD4-217ENST00000611848 ATP1B4Q9UN42 357 aaPredicted RBP14.04□□□□□ -0.16
SMAD4-217ENST00000611848 GLI2P10070 1586 aa14.04□□□□□ -0.16
SMAD4-217ENST00000611848 PLEKHD1A6NEE1 506 aa14.02□□□□□ -0.16
SMAD4-217ENST00000611848 FYCO1Q9BQS8 1478 aa14.01□□□□□ -0.17
SMAD4-217ENST00000611848 PCF11O94913 1555 aaKnown RBP14.01□□□□□ -0.17
SMAD4-217ENST00000611848 KCNH8Q96L42 1107 aa14.01□□□□□ -0.17
SMAD4-217ENST00000611848 CDK13Q14004 1512 aaKnown RBP14□□□□□ -0.17
SMAD4-217ENST00000611848 CDK11AQ9UQ88 783 aaPredicted RBP14□□□□□ -0.17
SMAD4-217ENST00000611848 CCDC18Q5T9S5 1454 aa13.99□□□□□ -0.17
SMAD4-217ENST00000611848 TSPOAP1O95153 1857 aa13.98□□□□□ -0.17
SMAD4-217ENST00000611848 LRRIQ1Q96JM4 1722 aa13.98□□□□□ -0.17
SMAD4-217ENST00000611848 MAP3K4Q9Y6R4 1608 aa13.97□□□□□ -0.17
SMAD4-217ENST00000611848 CFAP43Q8NDM7 1665 aa13.96□□□□□ -0.17
SMAD4-217ENST00000611848 CD109Q6YHK3 1445 aa13.94□□□□□ -0.18
SMAD4-217ENST00000611848 VPS8Q8N3P4 1428 aa13.94□□□□□ -0.18
SMAD4-217ENST00000611848 ABCA9Q8IUA7 1624 aa13.93□□□□□ -0.18
SMAD4-217ENST00000611848 PPRC1Q5VV67 1664 aaKnown RBP13.92□□□□□ -0.18
SMAD4-217ENST00000611848 TROQ12816 1431 aaPredicted RBP13.92□□□□□ -0.18
SMAD4-217ENST00000611848 TEX14Q8IWB6 1497 aa13.92□□□□□ -0.18
SMAD4-217ENST00000611848 MAGI3Q5TCQ9 1506 aa13.91□□□□□ -0.18
SMAD4-217ENST00000611848 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.89□□□□□ -0.19
SMAD4-217ENST00000611848 KIF14Q15058 1648 aa13.87□□□□□ -0.19
SMAD4-217ENST00000611848 TTC37Q6PGP7 1564 aa13.85□□□□□ -0.19
SMAD4-217ENST00000611848 PHLDB1Q86UU1 1377 aa13.85□□□□□ -0.19
SMAD4-217ENST00000611848 MTUS2Q5JR59 1369 aa13.84□□□□□ -0.19
SMAD4-217ENST00000611848 KDM6BO15054 1643 aa13.83□□□□□ -0.2
SMAD4-217ENST00000611848 NEO1Q92859 1461 aa13.83□□□□□ -0.2
SMAD4-217ENST00000611848 MAP3K1Q13233 1512 aa13.83□□□□□ -0.2
SMAD4-217ENST00000611848 TIAM1Q13009 1591 aa13.83□□□□□ -0.2
SMAD4-217ENST00000611848 PLCH2O75038 1416 aa13.82□□□□□ -0.2
SMAD4-217ENST00000611848 APLP2Q06481 763 aa13.82□□□□□ -0.2
SMAD4-217ENST00000611848 EHBP1L1Q8N3D4 1523 aa13.82□□□□□ -0.2
SMAD4-217ENST00000611848 MYO5CQ9NQX4 1742 aa13.81□□□□□ -0.2
SMAD4-217ENST00000611848 ARAP3Q8WWN8 1544 aa13.81□□□□□ -0.2
SMAD4-217ENST00000611848 CFAP74Q9C0B2 1584 aa13.8□□□□□ -0.2
SMAD4-217ENST00000611848 FANCAO15360 1455 aa13.8□□□□□ -0.2
SMAD4-217ENST00000611848 EFCAB2Q5VUJ9 269 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms