RNA–Protein interactions for RNA: ENST00000607272.2

MSH6-212, Transcript of mutS homolog 6, humanhuman

TSL 2

Gene MSH6, Length 2,219 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-212ENST00000607272 ARHGAP35Q9NRY4 1499 aa17.91■□□□□ 0.46
MSH6-212ENST00000607272 CUX1P39880 1505 aa17.9■□□□□ 0.46
MSH6-212ENST00000607272 TSHZ2Q9NRE2 1034 aa17.88■□□□□ 0.45
MSH6-212ENST00000607272 RAB3GAP2Q9H2M9 1393 aa17.87■□□□□ 0.45
MSH6-212ENST00000607272 MAP3K1Q13233 1512 aa17.86■□□□□ 0.45
MSH6-212ENST00000607272 HMGXB3Q12766 1538 aa17.84■□□□□ 0.45
MSH6-212ENST00000607272 ITGAEP38570 1179 aa17.84■□□□□ 0.45
MSH6-212ENST00000607272 NCAPD3P42695 1498 aa17.84■□□□□ 0.45
MSH6-212ENST00000607272 MAPKBP1O60336 1514 aa17.83■□□□□ 0.45
MSH6-212ENST00000607272 SETD5Q9C0A6 1442 aa17.81■□□□□ 0.44
MSH6-212ENST00000607272 CFTRP13569 1480 aa17.79■□□□□ 0.44
MSH6-212ENST00000607272 TIMELESSQ9UNS1 1208 aa17.79■□□□□ 0.44
MSH6-212ENST00000607272 TIAM1Q13009 1591 aa17.78■□□□□ 0.44
MSH6-212ENST00000607272 KCNH8Q96L42 1107 aa17.78■□□□□ 0.44
MSH6-212ENST00000607272 ANP32EQ9BTT0 268 aa17.76■□□□□ 0.43
MSH6-212ENST00000607272 IGF1RP08069 1367 aa17.74■□□□□ 0.43
MSH6-212ENST00000607272 LRRC9Q6ZRR7 1453 aa17.73■□□□□ 0.43
MSH6-212ENST00000607272 DDX10Q13206 875 aaKnown RBP17.72■□□□□ 0.43
MSH6-212ENST00000607272 WDR97A6NE52 1622 aa17.7■□□□□ 0.42
MSH6-212ENST00000607272 PPP1R15AO75807 674 aaPredicted RBP17.7■□□□□ 0.42
MSH6-212ENST00000607272 FHAD1B1AJZ9 1412 aa17.69■□□□□ 0.42
MSH6-212ENST00000607272 PHLDB1Q86UU1 1377 aa17.69■□□□□ 0.42
MSH6-212ENST00000607272 FKBP8Q14318 412 aa17.68■□□□□ 0.42
MSH6-212ENST00000607272 CCER2I3L3R5 266 aa17.68■□□□□ 0.42
MSH6-212ENST00000607272 CARMIL1Q5VZK9 1371 aa17.67■□□□□ 0.42
MSH6-212ENST00000607272 SIN3AQ96ST3 1273 aa17.67■□□□□ 0.42
MSH6-212ENST00000607272 FAM50AQ14320 339 aaKnown RBP17.66■□□□□ 0.42
MSH6-212ENST00000607272 NEFLP07196 543 aa17.66■□□□□ 0.42
MSH6-212ENST00000607272 BCANQ96GW7 911 aa17.63■□□□□ 0.41
MSH6-212ENST00000607272 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.62■□□□□ 0.41
MSH6-212ENST00000607272 ANP32CO43423 234 aa17.62■□□□□ 0.41
MSH6-212ENST00000607272 CFAP43Q8NDM7 1665 aa17.59■□□□□ 0.41
MSH6-212ENST00000607272 PRDM2Q13029 1718 aa17.59■□□□□ 0.41
MSH6-212ENST00000607272 PCF11O94913 1555 aaKnown RBP17.54■□□□□ 0.4
MSH6-212ENST00000607272 FGD5Q6ZNL6 1462 aa17.53■□□□□ 0.4
MSH6-212ENST00000607272 FYCO1Q9BQS8 1478 aa17.53■□□□□ 0.4
MSH6-212ENST00000607272 CADPSQ9ULU8 1353 aa17.53■□□□□ 0.4
MSH6-212ENST00000607272 TRIM52Q96A61 297 aa17.52■□□□□ 0.4
MSH6-212ENST00000607272 RBM19Q9Y4C8 960 aaKnown RBP17.52■□□□□ 0.4
MSH6-212ENST00000607272 AQRO60306 1485 aaKnown RBP eCLIP17.51■□□□□ 0.39
MSH6-212ENST00000607272 TONSLQ96HA7 1378 aa17.5■□□□□ 0.39
MSH6-212ENST00000607272 ATP1B4Q9UN42 357 aaPredicted RBP17.5■□□□□ 0.39
MSH6-212ENST00000607272 CASKIN1Q8WXD9 1431 aa17.5■□□□□ 0.39
MSH6-212ENST00000607272 HIRIP3Q9BW71 556 aaPredicted RBP17.49■□□□□ 0.39
MSH6-212ENST00000607272 EFCAB5A4FU69 1503 aa17.49■□□□□ 0.39
MSH6-212ENST00000607272 P3H3Q8IVL6 736 aa17.48■□□□□ 0.39
MSH6-212ENST00000607272 FOXD4L1Q9NU39 408 aa17.48■□□□□ 0.39
MSH6-212ENST00000607272 FHOD3Q2V2M9 1422 aa17.46■□□□□ 0.39
MSH6-212ENST00000607272 FGD6Q6ZV73 1430 aa17.45■□□□□ 0.38
MSH6-212ENST00000607272 UACAQ9BZF9 1416 aa17.44■□□□□ 0.38
MSH6-212ENST00000607272 HFM1A2PYH4 1435 aa17.43■□□□□ 0.38
MSH6-212ENST00000607272 CCDC18Q5T9S5 1454 aa17.43■□□□□ 0.38
MSH6-212ENST00000607272 FMN1Q68DA7 1419 aa17.42■□□□□ 0.38
MSH6-212ENST00000607272 PIAS4Q8N2W9 510 aaPredicted RBP17.37■□□□□ 0.37
MSH6-212ENST00000607272 ABCA10Q8WWZ4 1543 aa17.37■□□□□ 0.37
MSH6-212ENST00000607272 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
MSH6-212ENST00000607272 PTPN23Q9H3S7 1636 aa17.36■□□□□ 0.37
MSH6-212ENST00000607272 CC2D2AQ9P2K1 1620 aa17.35■□□□□ 0.37
MSH6-212ENST00000607272 PTPRKQ15262 1439 aa17.34■□□□□ 0.37
MSH6-212ENST00000607272 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
MSH6-212ENST00000607272 NAIPQ13075 1403 aa17.33■□□□□ 0.37
MSH6-212ENST00000607272 HNRNPUQ00839 825 aaKnown RBP eCLIP17.33■□□□□ 0.37
MSH6-212ENST00000607272 ERICH6BQ5W0A0 696 aa17.33■□□□□ 0.37
MSH6-212ENST00000607272 CUL7Q14999 1698 aa17.33■□□□□ 0.37
MSH6-212ENST00000607272 FANCD2Q9BXW9 1451 aa17.33■□□□□ 0.37
MSH6-212ENST00000607272 SNAPC4Q5SXM2 1469 aa17.33■□□□□ 0.36
MSH6-212ENST00000607272 FANCIQ9NVI1 1328 aa17.32■□□□□ 0.36
MSH6-212ENST00000607272 CDK11AQ9UQ88 783 aaPredicted RBP17.32■□□□□ 0.36
MSH6-212ENST00000607272 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
MSH6-212ENST00000607272 MYOM3Q5VTT5 1437 aa17.3■□□□□ 0.36
MSH6-212ENST00000607272 CTTNBP2Q8WZ74 1663 aa17.3■□□□□ 0.36
MSH6-212ENST00000607272 RAD54L2Q9Y4B4 1467 aa17.3■□□□□ 0.36
MSH6-212ENST00000607272 KDM5BQ9UGL1 1544 aa17.29■□□□□ 0.36
MSH6-212ENST00000607272 PRKCSHP14314 528 aaPredicted RBP17.29■□□□□ 0.36
MSH6-212ENST00000607272 POLA1P09884 1462 aaPredicted RBP17.28■□□□□ 0.36
MSH6-212ENST00000607272 NCOA2Q15596 1464 aa17.28■□□□□ 0.36
MSH6-212ENST00000607272 MSH5O43196 834 aa17.26■□□□□ 0.35
MSH6-212ENST00000607272 WASHC2AQ641Q2 1341 aa17.25■□□□□ 0.35
MSH6-212ENST00000607272 TOPBP1Q92547 1522 aa17.25■□□□□ 0.35
MSH6-212ENST00000607272 HSPA5P11021 654 aaKnown RBP17.24■□□□□ 0.35
MSH6-212ENST00000607272 THOC2Q8NI27 1593 aaKnown RBP17.24■□□□□ 0.35
MSH6-212ENST00000607272 EIF4G2P78344 907 aaKnown RBP eCLIP17.23■□□□□ 0.35
MSH6-212ENST00000607272 GRIN2BQ13224 1484 aa17.22■□□□□ 0.35
MSH6-212ENST00000607272 SUPT6HQ7KZ85 1726 aaKnown RBP17.22■□□□□ 0.35
MSH6-212ENST00000607272 PPP4R2Q9NY27 417 aa17.22■□□□□ 0.35
MSH6-212ENST00000607272 SAMD9Q5K651 1589 aa17.22■□□□□ 0.35
MSH6-212ENST00000607272 EHBP1L1Q8N3D4 1523 aa17.22■□□□□ 0.35
MSH6-212ENST00000607272 CNKSR2Q8WXI2 1034 aa17.21■□□□□ 0.35
MSH6-212ENST00000607272 CNTLNQ9NXG0 1405 aa17.19■□□□□ 0.34
MSH6-212ENST00000607272 IRX6P78412 446 aaPredicted RBP17.19■□□□□ 0.34
MSH6-212ENST00000607272 AKNAQ7Z591 1439 aa17.18■□□□□ 0.34
MSH6-212ENST00000607272 ERICH6Q7L0X2 663 aa17.18■□□□□ 0.34
MSH6-212ENST00000607272 UGGT2Q9NYU1 1516 aa17.18■□□□□ 0.34
MSH6-212ENST00000607272 ARHGEF11O15085 1522 aa17.17■□□□□ 0.34
MSH6-212ENST00000607272 TCOF1Q13428 1488 aaKnown RBP17.16■□□□□ 0.34
MSH6-212ENST00000607272 LRRIQ1Q96JM4 1722 aa17.16■□□□□ 0.34
MSH6-212ENST00000607272 RRP7BPQ9NSQ0 103 aa17.16■□□□□ 0.34
MSH6-212ENST00000607272 HECW1Q76N89 1606 aa17.15■□□□□ 0.34
MSH6-212ENST00000607272 PRKRIP1Q9H875 184 aaPredicted RBP17.14■□□□□ 0.33
MSH6-212ENST00000607272 DENND4BO75064 1496 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms